Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08975 and SGL_RS08980 are separated by 109 nucleotides SGL_RS08980 and SGL_RS08985 are separated by 73 nucleotides SGL_RS08985 and SGL_RS08990 are separated by 90 nucleotides
SGL_RS08975: SGL_RS08975 - redox-regulated ATPase YchF, at 1,520,009 to 1,521,100
_RS08975
SGL_RS08980: SGL_RS08980 - UDP-glucose 4-epimerase GalE, at 1,521,210 to 1,522,226
_RS08980
SGL_RS08985: SGL_RS08985 - hypothetical protein, at 1,522,300 to 1,522,899
_RS08985
SGL_RS08990: SGL_RS08990 - DUF2605 domain-containing protein, at 1,522,990 to 1,523,310
_RS08990
Position (kb)
1521
1522
1523 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 1520.328 kb on - strand, within SGL_RS08975 at 1520.424 kb on + strand, within SGL_RS08975 at 1520.503 kb on + strand, within SGL_RS08975 at 1520.582 kb on - strand, within SGL_RS08975 at 1520.582 kb on - strand, within SGL_RS08975 at 1520.776 kb on + strand, within SGL_RS08975 at 1520.840 kb on + strand, within SGL_RS08975 at 1520.913 kb on + strand, within SGL_RS08975 at 1520.965 kb on - strand, within SGL_RS08975 at 1520.984 kb on + strand, within SGL_RS08975 at 1521.023 kb on - strand at 1521.029 kb on - strand at 1521.090 kb on + strand at 1521.197 kb on - strand at 1522.388 kb on - strand, within SGL_RS08985 at 1522.393 kb on - strand, within SGL_RS08985 at 1522.395 kb on + strand, within SGL_RS08985 at 1522.489 kb on - strand, within SGL_RS08985 at 1522.519 kb on + strand, within SGL_RS08985 at 1522.547 kb on - strand, within SGL_RS08985 at 1522.611 kb on + strand, within SGL_RS08985 at 1522.651 kb on + strand, within SGL_RS08985 at 1522.659 kb on - strand, within SGL_RS08985 at 1522.659 kb on - strand, within SGL_RS08985 at 1522.686 kb on + strand, within SGL_RS08985 at 1522.703 kb on + strand, within SGL_RS08985 at 1522.750 kb on - strand, within SGL_RS08985 at 1522.765 kb on + strand, within SGL_RS08985 at 1522.781 kb on - strand, within SGL_RS08985 at 1522.903 kb on + strand at 1523.041 kb on - strand, within SGL_RS08990 at 1523.074 kb on - strand, within SGL_RS08990 at 1523.147 kb on + strand, within SGL_RS08990 at 1523.155 kb on - strand, within SGL_RS08990
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,520,328 - SGL_RS08975 0.29 +7.9 1,520,424 + SGL_RS08975 0.38 +7.5 1,520,503 + SGL_RS08975 0.45 +7.4 1,520,582 - SGL_RS08975 0.52 +7.8 1,520,582 - SGL_RS08975 0.52 +7.6 1,520,776 + SGL_RS08975 0.70 +7.7 1,520,840 + SGL_RS08975 0.76 +8.3 1,520,913 + SGL_RS08975 0.83 +8.1 1,520,965 - SGL_RS08975 0.88 +8.3 1,520,984 + SGL_RS08975 0.89 +7.8 1,521,023 - +8.4 1,521,029 - +8.0 1,521,090 + +4.2 1,521,197 - -1.8 1,522,388 - SGL_RS08985 0.15 -0.4 1,522,393 - SGL_RS08985 0.15 -0.2 1,522,395 + SGL_RS08985 0.16 -0.8 1,522,489 - SGL_RS08985 0.32 +0.0 1,522,519 + SGL_RS08985 0.36 -0.2 1,522,547 - SGL_RS08985 0.41 -0.1 1,522,611 + SGL_RS08985 0.52 +0.1 1,522,651 + SGL_RS08985 0.58 +0.5 1,522,659 - SGL_RS08985 0.60 +0.1 1,522,659 - SGL_RS08985 0.60 -0.5 1,522,686 + SGL_RS08985 0.64 -2.0 1,522,703 + SGL_RS08985 0.67 -1.1 1,522,750 - SGL_RS08985 0.75 -1.5 1,522,765 + SGL_RS08985 0.78 -1.8 1,522,781 - SGL_RS08985 0.80 -0.6 1,522,903 + -1.3 1,523,041 - SGL_RS08990 0.16 -0.2 1,523,074 - SGL_RS08990 0.26 +0.7 1,523,147 + SGL_RS08990 0.49 +0.1 1,523,155 - SGL_RS08990 0.51 +0.4
Or see this region's nucleotide sequence