Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08980

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08975 and SGL_RS08980 are separated by 109 nucleotidesSGL_RS08980 and SGL_RS08985 are separated by 73 nucleotidesSGL_RS08985 and SGL_RS08990 are separated by 90 nucleotides SGL_RS08975: SGL_RS08975 - redox-regulated ATPase YchF, at 1,520,009 to 1,521,100 _RS08975 SGL_RS08980: SGL_RS08980 - UDP-glucose 4-epimerase GalE, at 1,521,210 to 1,522,226 _RS08980 SGL_RS08985: SGL_RS08985 - hypothetical protein, at 1,522,300 to 1,522,899 _RS08985 SGL_RS08990: SGL_RS08990 - DUF2605 domain-containing protein, at 1,522,990 to 1,523,310 _RS08990 Position (kb) 1521 1522 1523Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 1520.328 kb on - strand, within SGL_RS08975at 1520.424 kb on + strand, within SGL_RS08975at 1520.503 kb on + strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.776 kb on + strand, within SGL_RS08975at 1520.840 kb on + strand, within SGL_RS08975at 1520.913 kb on + strand, within SGL_RS08975at 1520.965 kb on - strand, within SGL_RS08975at 1520.984 kb on + strand, within SGL_RS08975at 1521.023 kb on - strandat 1521.029 kb on - strandat 1521.090 kb on + strandat 1521.197 kb on - strandat 1522.388 kb on - strand, within SGL_RS08985at 1522.393 kb on - strand, within SGL_RS08985at 1522.395 kb on + strand, within SGL_RS08985at 1522.489 kb on - strand, within SGL_RS08985at 1522.519 kb on + strand, within SGL_RS08985at 1522.547 kb on - strand, within SGL_RS08985at 1522.611 kb on + strand, within SGL_RS08985at 1522.651 kb on + strand, within SGL_RS08985at 1522.659 kb on - strand, within SGL_RS08985at 1522.659 kb on - strand, within SGL_RS08985at 1522.686 kb on + strand, within SGL_RS08985at 1522.703 kb on + strand, within SGL_RS08985at 1522.750 kb on - strand, within SGL_RS08985at 1522.765 kb on + strand, within SGL_RS08985at 1522.781 kb on - strand, within SGL_RS08985at 1522.903 kb on + strandat 1523.041 kb on - strand, within SGL_RS08990at 1523.074 kb on - strand, within SGL_RS08990at 1523.147 kb on + strand, within SGL_RS08990at 1523.155 kb on - strand, within SGL_RS08990

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,520,328 - SGL_RS08975 0.29 +7.9
1,520,424 + SGL_RS08975 0.38 +7.5
1,520,503 + SGL_RS08975 0.45 +7.4
1,520,582 - SGL_RS08975 0.52 +7.8
1,520,582 - SGL_RS08975 0.52 +7.6
1,520,776 + SGL_RS08975 0.70 +7.7
1,520,840 + SGL_RS08975 0.76 +8.3
1,520,913 + SGL_RS08975 0.83 +8.1
1,520,965 - SGL_RS08975 0.88 +8.3
1,520,984 + SGL_RS08975 0.89 +7.8
1,521,023 - +8.4
1,521,029 - +8.0
1,521,090 + +4.2
1,521,197 - -1.8
1,522,388 - SGL_RS08985 0.15 -0.4
1,522,393 - SGL_RS08985 0.15 -0.2
1,522,395 + SGL_RS08985 0.16 -0.8
1,522,489 - SGL_RS08985 0.32 +0.0
1,522,519 + SGL_RS08985 0.36 -0.2
1,522,547 - SGL_RS08985 0.41 -0.1
1,522,611 + SGL_RS08985 0.52 +0.1
1,522,651 + SGL_RS08985 0.58 +0.5
1,522,659 - SGL_RS08985 0.60 +0.1
1,522,659 - SGL_RS08985 0.60 -0.5
1,522,686 + SGL_RS08985 0.64 -2.0
1,522,703 + SGL_RS08985 0.67 -1.1
1,522,750 - SGL_RS08985 0.75 -1.5
1,522,765 + SGL_RS08985 0.78 -1.8
1,522,781 - SGL_RS08985 0.80 -0.6
1,522,903 + -1.3
1,523,041 - SGL_RS08990 0.16 -0.2
1,523,074 - SGL_RS08990 0.26 +0.7
1,523,147 + SGL_RS08990 0.49 +0.1
1,523,155 - SGL_RS08990 0.51 +0.4

Or see this region's nucleotide sequence