Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08900

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08895 and SGL_RS08900 are separated by 105 nucleotidesSGL_RS08900 and SGL_RS08905 are separated by 161 nucleotidesSGL_RS08905 and SGL_RS08910 are separated by 78 nucleotides SGL_RS08895: SGL_RS08895 - FAD-dependent oxidoreductase, at 1,504,818 to 1,506,770 _RS08895 SGL_RS08900: SGL_RS08900 - DUF6335 family protein, at 1,506,876 to 1,507,319 _RS08900 SGL_RS08905: SGL_RS08905 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,507,481 to 1,508,092 _RS08905 SGL_RS08910: SGL_RS08910 - hypothetical protein, at 1,508,171 to 1,508,386 _RS08910 Position (kb) 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1at 1505.900 kb on - strand, within SGL_RS08895at 1506.146 kb on - strand, within SGL_RS08895at 1506.408 kb on - strand, within SGL_RS08895at 1506.467 kb on - strand, within SGL_RS08895at 1506.537 kb on + strand, within SGL_RS08895at 1506.702 kb on - strandat 1506.826 kb on + strandat 1506.849 kb on + strandat 1506.934 kb on - strand, within SGL_RS08900at 1507.187 kb on + strand, within SGL_RS08900at 1507.255 kb on + strand, within SGL_RS08900at 1507.718 kb on + strand, within SGL_RS08905at 1507.726 kb on - strand, within SGL_RS08905at 1508.129 kb on - strandat 1508.129 kb on - strandat 1508.195 kb on + strand, within SGL_RS08910

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,505,900 - SGL_RS08895 0.55 -1.2
1,506,146 - SGL_RS08895 0.68 -1.7
1,506,408 - SGL_RS08895 0.81 -0.9
1,506,467 - SGL_RS08895 0.84 -2.8
1,506,537 + SGL_RS08895 0.88 -2.1
1,506,702 - -0.9
1,506,826 + +0.2
1,506,849 + -2.1
1,506,934 - SGL_RS08900 0.13 -1.6
1,507,187 + SGL_RS08900 0.70 -1.4
1,507,255 + SGL_RS08900 0.85 -0.2
1,507,718 + SGL_RS08905 0.39 +0.7
1,507,726 - SGL_RS08905 0.40 +0.2
1,508,129 - -0.7
1,508,129 - +0.6
1,508,195 + SGL_RS08910 0.11 +0.3

Or see this region's nucleotide sequence