Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08250

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08245 and SGL_RS08250 are separated by 8 nucleotidesSGL_RS08250 and SGL_RS08255 are separated by 121 nucleotides SGL_RS08245: SGL_RS08245 - hypothetical protein, at 1,357,740 to 1,358,837 _RS08245 SGL_RS08250: SGL_RS08250 - glycoside hydrolase family 13 protein, at 1,358,846 to 1,360,312 _RS08250 SGL_RS08255: SGL_RS08255 - ABC-F family ATP-binding cassette domain-containing protein, at 1,360,434 to 1,362,158 _RS08255 Position (kb) 1358 1359 1360 1361Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1357.913 kb on - strand, within SGL_RS08245at 1358.036 kb on + strand, within SGL_RS08245at 1358.212 kb on + strand, within SGL_RS08245at 1358.386 kb on + strand, within SGL_RS08245at 1358.396 kb on + strand, within SGL_RS08245at 1358.781 kb on - strandat 1359.071 kb on + strand, within SGL_RS08250at 1359.079 kb on - strand, within SGL_RS08250at 1359.139 kb on - strand, within SGL_RS08250at 1359.165 kb on - strand, within SGL_RS08250at 1359.218 kb on + strand, within SGL_RS08250at 1359.282 kb on - strand, within SGL_RS08250at 1359.306 kb on - strand, within SGL_RS08250at 1359.424 kb on + strand, within SGL_RS08250at 1359.450 kb on + strand, within SGL_RS08250at 1359.606 kb on + strand, within SGL_RS08250at 1359.626 kb on - strand, within SGL_RS08250at 1359.715 kb on - strand, within SGL_RS08250at 1359.717 kb on + strand, within SGL_RS08250at 1359.720 kb on - strand, within SGL_RS08250at 1359.801 kb on - strand, within SGL_RS08250at 1359.846 kb on + strand, within SGL_RS08250at 1359.958 kb on - strand, within SGL_RS08250at 1359.960 kb on + strand, within SGL_RS08250at 1360.026 kb on - strand, within SGL_RS08250at 1360.029 kb on - strand, within SGL_RS08250at 1360.050 kb on - strand, within SGL_RS08250at 1360.170 kb on - strandat 1360.172 kb on - strandat 1360.198 kb on + strandat 1360.229 kb on + strandat 1360.232 kb on - strandat 1360.234 kb on + strandat 1360.423 kb on + strandat 1360.431 kb on + strandat 1360.431 kb on - strandat 1360.431 kb on - strandat 1360.527 kb on - strandat 1360.532 kb on - strandat 1360.584 kb on + strandat 1360.648 kb on + strand, within SGL_RS08255at 1360.703 kb on - strand, within SGL_RS08255at 1360.829 kb on - strand, within SGL_RS08255at 1361.048 kb on + strand, within SGL_RS08255at 1361.279 kb on + strand, within SGL_RS08255

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,357,913 - SGL_RS08245 0.16 -0.3
1,358,036 + SGL_RS08245 0.27 -0.2
1,358,212 + SGL_RS08245 0.43 +0.0
1,358,386 + SGL_RS08245 0.59 -0.2
1,358,396 + SGL_RS08245 0.60 -1.0
1,358,781 - -1.2
1,359,071 + SGL_RS08250 0.15 +0.4
1,359,079 - SGL_RS08250 0.16 +0.3
1,359,139 - SGL_RS08250 0.20 +0.0
1,359,165 - SGL_RS08250 0.22 +0.8
1,359,218 + SGL_RS08250 0.25 -1.1
1,359,282 - SGL_RS08250 0.30 -0.3
1,359,306 - SGL_RS08250 0.31 -1.8
1,359,424 + SGL_RS08250 0.39 +0.1
1,359,450 + SGL_RS08250 0.41 +0.7
1,359,606 + SGL_RS08250 0.52 -0.6
1,359,626 - SGL_RS08250 0.53 -0.3
1,359,715 - SGL_RS08250 0.59 -0.2
1,359,717 + SGL_RS08250 0.59 -0.1
1,359,720 - SGL_RS08250 0.60 -0.1
1,359,801 - SGL_RS08250 0.65 -0.8
1,359,846 + SGL_RS08250 0.68 +0.1
1,359,958 - SGL_RS08250 0.76 -0.7
1,359,960 + SGL_RS08250 0.76 -3.8
1,360,026 - SGL_RS08250 0.80 -0.1
1,360,029 - SGL_RS08250 0.81 -2.4
1,360,050 - SGL_RS08250 0.82 -2.0
1,360,170 - -0.3
1,360,172 - -0.0
1,360,198 + +4.8
1,360,229 + -0.1
1,360,232 - +0.3
1,360,234 + +2.7
1,360,423 + +3.0
1,360,431 + +2.5
1,360,431 - +3.0
1,360,431 - +2.9
1,360,527 - +2.9
1,360,532 - +1.3
1,360,584 + +2.7
1,360,648 + SGL_RS08255 0.12 +1.1
1,360,703 - SGL_RS08255 0.16 +3.0
1,360,829 - SGL_RS08255 0.23 +2.9
1,361,048 + SGL_RS08255 0.36 +2.9
1,361,279 + SGL_RS08255 0.49 +1.5

Or see this region's nucleotide sequence