Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08125

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08120 and SGL_RS08125 are separated by 143 nucleotidesSGL_RS08125 and SGL_RS08130 are separated by 209 nucleotides SGL_RS08120: SGL_RS08120 - N-acetylmuramoyl-L-alanine amidase, at 1,332,429 to 1,334,378 _RS08120 SGL_RS08125: SGL_RS08125 - glutamate racemase, at 1,334,522 to 1,335,361 _RS08125 SGL_RS08130: SGL_RS08130 - Rieske 2Fe-2S domain-containing protein, at 1,335,571 to 1,336,980 _RS08130 Position (kb) 1334 1335 1336Strain fitness (log2 ratio) -2 -1 0 1at 1335.489 kb on - strandat 1335.529 kb on + strandat 1335.643 kb on - strandat 1335.667 kb on + strandat 1335.795 kb on + strand, within SGL_RS08130at 1335.812 kb on - strand, within SGL_RS08130at 1336.091 kb on - strand, within SGL_RS08130at 1336.115 kb on + strand, within SGL_RS08130at 1336.115 kb on + strand, within SGL_RS08130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,335,489 - -2.0
1,335,529 + -1.0
1,335,643 - -1.0
1,335,667 + -1.7
1,335,795 + SGL_RS08130 0.16 -0.9
1,335,812 - SGL_RS08130 0.17 -0.2
1,336,091 - SGL_RS08130 0.37 -0.7
1,336,115 + SGL_RS08130 0.39 -1.6
1,336,115 + SGL_RS08130 0.39 -0.0

Or see this region's nucleotide sequence