Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08095

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08085 and SGL_RS08090 are separated by 253 nucleotidesSGL_RS08090 and SGL_RS08095 are separated by 118 nucleotidesSGL_RS08095 and SGL_RS08100 are separated by 47 nucleotidesSGL_RS08100 and SGL_RS08105 are separated by 151 nucleotidesSGL_RS08105 and SGL_RS08110 are separated by 119 nucleotides SGL_RS08085: SGL_RS08085 - DUF1499 domain-containing protein, at 1,326,150 to 1,326,626 _RS08085 SGL_RS08090: SGL_RS08090 - photosystem II reaction center protein Psb28, at 1,326,880 to 1,327,248 _RS08090 SGL_RS08095: SGL_RS08095 - peptide ABC transporter substrate-binding protein, at 1,327,367 to 1,329,115 _RS08095 SGL_RS08100: SGL_RS08100 - tRNA-Asp, at 1,329,163 to 1,329,236 _RS08100 SGL_RS08105: SGL_RS08105 - hypothetical protein, at 1,329,388 to 1,329,990 _RS08105 SGL_RS08110: SGL_RS08110 - type 1 glutamine amidotransferase, at 1,330,110 to 1,330,880 _RS08110 Position (kb) 1327 1328 1329 1330Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1326.455 kb on + strand, within SGL_RS08085at 1326.575 kb on - strand, within SGL_RS08085at 1326.652 kb on + strandat 1326.735 kb on + strandat 1326.791 kb on + strandat 1326.793 kb on + strandat 1326.835 kb on + strandat 1326.887 kb on + strandat 1326.946 kb on - strand, within SGL_RS08090at 1326.979 kb on + strand, within SGL_RS08090at 1326.987 kb on - strand, within SGL_RS08090at 1327.017 kb on + strand, within SGL_RS08090at 1327.395 kb on + strandat 1327.484 kb on + strandat 1327.789 kb on + strand, within SGL_RS08095at 1327.797 kb on - strand, within SGL_RS08095at 1327.882 kb on + strand, within SGL_RS08095at 1328.197 kb on + strand, within SGL_RS08095at 1328.214 kb on + strand, within SGL_RS08095at 1328.257 kb on - strand, within SGL_RS08095at 1328.398 kb on + strand, within SGL_RS08095at 1328.424 kb on - strand, within SGL_RS08095at 1328.684 kb on - strand, within SGL_RS08095at 1328.779 kb on + strand, within SGL_RS08095at 1329.012 kb on + strandat 1329.027 kb on + strandat 1329.131 kb on - strandat 1329.281 kb on + strandat 1329.361 kb on - strandat 1329.362 kb on - strandat 1329.471 kb on + strand, within SGL_RS08105at 1329.471 kb on + strand, within SGL_RS08105at 1329.471 kb on + strand, within SGL_RS08105at 1329.544 kb on - strand, within SGL_RS08105at 1329.556 kb on + strand, within SGL_RS08105at 1329.610 kb on + strand, within SGL_RS08105at 1329.694 kb on + strand, within SGL_RS08105at 1329.832 kb on - strand, within SGL_RS08105at 1329.864 kb on + strand, within SGL_RS08105at 1329.871 kb on + strand, within SGL_RS08105at 1329.937 kb on - strandat 1329.958 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,326,455 + SGL_RS08085 0.64 +0.7
1,326,575 - SGL_RS08085 0.89 -0.6
1,326,652 + +0.4
1,326,735 + +1.2
1,326,791 + -0.7
1,326,793 + +0.4
1,326,835 + -0.6
1,326,887 + -0.1
1,326,946 - SGL_RS08090 0.18 -0.5
1,326,979 + SGL_RS08090 0.27 -0.3
1,326,987 - SGL_RS08090 0.29 +0.3
1,327,017 + SGL_RS08090 0.37 -1.6
1,327,395 + -3.4
1,327,484 + -5.0
1,327,789 + SGL_RS08095 0.24 -3.8
1,327,797 - SGL_RS08095 0.25 -3.5
1,327,882 + SGL_RS08095 0.29 -1.8
1,328,197 + SGL_RS08095 0.47 -3.2
1,328,214 + SGL_RS08095 0.48 -4.3
1,328,257 - SGL_RS08095 0.51 -3.4
1,328,398 + SGL_RS08095 0.59 -3.6
1,328,424 - SGL_RS08095 0.60 -3.8
1,328,684 - SGL_RS08095 0.75 -5.2
1,328,779 + SGL_RS08095 0.81 -4.4
1,329,012 + -4.3
1,329,027 + -4.1
1,329,131 - -1.3
1,329,281 + -0.2
1,329,361 - -0.7
1,329,362 - -0.6
1,329,471 + SGL_RS08105 0.14 -2.3
1,329,471 + SGL_RS08105 0.14 -0.7
1,329,471 + SGL_RS08105 0.14 -2.7
1,329,544 - SGL_RS08105 0.26 -0.2
1,329,556 + SGL_RS08105 0.28 -0.6
1,329,610 + SGL_RS08105 0.37 -0.7
1,329,694 + SGL_RS08105 0.51 +1.7
1,329,832 - SGL_RS08105 0.74 -1.1
1,329,864 + SGL_RS08105 0.79 -1.4
1,329,871 + SGL_RS08105 0.80 -0.1
1,329,937 - -3.1
1,329,958 + -1.2

Or see this region's nucleotide sequence