Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07985

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07980 and SGL_RS07985 are separated by 428 nucleotidesSGL_RS07985 and SGL_RS07990 overlap by 8 nucleotides SGL_RS07980: SGL_RS07980 - threonine synthase, at 1,303,295 to 1,304,596 _RS07980 SGL_RS07985: SGL_RS07985 - glycosyltransferase family 39 protein, at 1,305,025 to 1,306,443 _RS07985 SGL_RS07990: SGL_RS07990 - diguanylate cyclase, at 1,306,436 to 1,309,264 _RS07990 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1304.725 kb on + strandat 1304.787 kb on - strandat 1305.057 kb on + strandat 1305.058 kb on - strandat 1305.077 kb on + strandat 1305.720 kb on - strand, within SGL_RS07985at 1305.771 kb on - strand, within SGL_RS07985at 1305.915 kb on + strand, within SGL_RS07985at 1306.410 kb on - strandat 1306.414 kb on + strandat 1306.414 kb on + strandat 1306.527 kb on + strandat 1306.554 kb on + strandat 1306.645 kb on + strandat 1306.650 kb on + strandat 1306.658 kb on - strandat 1306.854 kb on - strand, within SGL_RS07990at 1307.000 kb on - strand, within SGL_RS07990at 1307.077 kb on + strand, within SGL_RS07990at 1307.189 kb on + strand, within SGL_RS07990at 1307.270 kb on - strand, within SGL_RS07990at 1307.280 kb on - strand, within SGL_RS07990at 1307.338 kb on - strand, within SGL_RS07990

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,304,725 + -0.0
1,304,787 - -2.1
1,305,057 + -1.9
1,305,058 - -4.9
1,305,077 + -1.7
1,305,720 - SGL_RS07985 0.49 -4.8
1,305,771 - SGL_RS07985 0.53 -3.6
1,305,915 + SGL_RS07985 0.63 -4.2
1,306,410 - -1.2
1,306,414 + -4.8
1,306,414 + -3.8
1,306,527 + -0.1
1,306,554 + +0.4
1,306,645 + -0.4
1,306,650 + -0.6
1,306,658 - +0.1
1,306,854 - SGL_RS07990 0.15 +0.6
1,307,000 - SGL_RS07990 0.20 +0.6
1,307,077 + SGL_RS07990 0.23 +0.6
1,307,189 + SGL_RS07990 0.27 +1.6
1,307,270 - SGL_RS07990 0.29 -0.1
1,307,280 - SGL_RS07990 0.30 -0.2
1,307,338 - SGL_RS07990 0.32 -0.9

Or see this region's nucleotide sequence