Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides SGL_RS07945 and SGL_RS07950 are separated by 143 nucleotides SGL_RS07950 and SGL_RS07955 are separated by 154 nucleotides SGL_RS07955 and SGL_RS07960 are separated by 3 nucleotides
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
SGL_RS07950: SGL_RS07950 - methyltransferase domain-containing protein, at 1,297,643 to 1,298,965
_RS07950
SGL_RS07955: SGL_RS07955 - hypothetical protein, at 1,299,120 to 1,299,725
_RS07955
SGL_RS07960: SGL_RS07960 - DUF29 domain-containing protein, at 1,299,729 to 1,300,166
_RS07960
Position (kb) 1297
1298
1299 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945 at 1297.562 kb on - strand at 1297.654 kb on - strand at 1297.700 kb on - strand at 1297.702 kb on + strand at 1297.732 kb on + strand at 1297.740 kb on - strand at 1297.788 kb on + strand, within SGL_RS07950 at 1297.802 kb on - strand, within SGL_RS07950 at 1297.973 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.022 kb on + strand, within SGL_RS07950 at 1298.320 kb on + strand, within SGL_RS07950 at 1298.464 kb on + strand, within SGL_RS07950 at 1298.524 kb on + strand, within SGL_RS07950 at 1298.537 kb on + strand, within SGL_RS07950 at 1298.666 kb on + strand, within SGL_RS07950 at 1298.768 kb on + strand, within SGL_RS07950 at 1298.810 kb on - strand, within SGL_RS07950 at 1298.810 kb on - strand, within SGL_RS07950 at 1298.858 kb on + strand at 1298.973 kb on + strand at 1299.173 kb on - strand at 1299.318 kb on - strand, within SGL_RS07955 at 1299.351 kb on + strand, within SGL_RS07955 at 1299.383 kb on + strand, within SGL_RS07955 at 1299.909 kb on + strand, within SGL_RS07960
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,296,773 + SGL_RS07940 0.76 -4.3 1,296,773 + SGL_RS07940 0.76 -3.3 1,297,108 - SGL_RS07945 0.23 -0.4 1,297,163 - SGL_RS07945 0.34 -2.1 1,297,366 + SGL_RS07945 0.74 -1.9 1,297,562 - +0.7 1,297,654 - +0.3 1,297,700 - -0.1 1,297,702 + +0.8 1,297,732 + -0.8 1,297,740 - +0.6 1,297,788 + SGL_RS07950 0.11 -0.3 1,297,802 - SGL_RS07950 0.12 +2.6 1,297,973 - SGL_RS07950 0.25 -0.2 1,298,005 - SGL_RS07950 0.27 -1.2 1,298,005 - SGL_RS07950 0.27 +1.0 1,298,022 + SGL_RS07950 0.29 +0.3 1,298,320 + SGL_RS07950 0.51 -0.7 1,298,464 + SGL_RS07950 0.62 +0.4 1,298,524 + SGL_RS07950 0.67 +1.0 1,298,537 + SGL_RS07950 0.68 -0.5 1,298,666 + SGL_RS07950 0.77 -0.6 1,298,768 + SGL_RS07950 0.85 -0.7 1,298,810 - SGL_RS07950 0.88 -0.9 1,298,810 - SGL_RS07950 0.88 -0.6 1,298,858 + -1.1 1,298,973 + +0.4 1,299,173 - +1.2 1,299,318 - SGL_RS07955 0.33 +0.1 1,299,351 + SGL_RS07955 0.38 +3.7 1,299,383 + SGL_RS07955 0.43 -0.8 1,299,909 + SGL_RS07960 0.41 +0.4
Or see this region's nucleotide sequence