Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07810

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07805 and SGL_RS07810 overlap by 4 nucleotidesSGL_RS07810 and SGL_RS07815 are separated by 108 nucleotides SGL_RS07805: SGL_RS07805 - methylenetetrahydrofolate reductase, at 1,268,388 to 1,269,410 _RS07805 SGL_RS07810: SGL_RS07810 - glycosyltransferase family 39 protein, at 1,269,407 to 1,270,960 _RS07810 SGL_RS07815: SGL_RS07815 - aminotransferase class V-fold PLP-dependent enzyme, at 1,271,069 to 1,272,274 _RS07815 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1268.435 kb on + strandat 1269.383 kb on + strandat 1269.457 kb on + strandat 1269.548 kb on - strandat 1269.550 kb on + strandat 1269.619 kb on - strand, within SGL_RS07810at 1269.640 kb on - strand, within SGL_RS07810at 1269.705 kb on + strand, within SGL_RS07810at 1269.738 kb on + strand, within SGL_RS07810at 1269.871 kb on - strand, within SGL_RS07810at 1270.089 kb on - strand, within SGL_RS07810at 1270.121 kb on - strand, within SGL_RS07810at 1270.121 kb on - strand, within SGL_RS07810at 1270.165 kb on - strand, within SGL_RS07810at 1270.165 kb on - strand, within SGL_RS07810at 1270.317 kb on - strand, within SGL_RS07810at 1270.330 kb on - strand, within SGL_RS07810at 1270.397 kb on - strand, within SGL_RS07810at 1270.414 kb on - strand, within SGL_RS07810at 1270.455 kb on - strand, within SGL_RS07810at 1270.476 kb on + strand, within SGL_RS07810at 1270.759 kb on - strand, within SGL_RS07810at 1270.938 kb on + strandat 1270.953 kb on - strandat 1270.985 kb on + strandat 1270.993 kb on - strandat 1271.079 kb on - strandat 1271.079 kb on - strandat 1271.086 kb on + strandat 1271.094 kb on - strandat 1271.123 kb on + strandat 1271.166 kb on + strandat 1271.247 kb on - strand, within SGL_RS07815at 1271.279 kb on - strand, within SGL_RS07815at 1271.308 kb on - strand, within SGL_RS07815at 1271.310 kb on - strand, within SGL_RS07815at 1271.324 kb on - strand, within SGL_RS07815at 1271.485 kb on - strand, within SGL_RS07815at 1271.495 kb on - strand, within SGL_RS07815at 1271.495 kb on - strand, within SGL_RS07815at 1271.500 kb on - strand, within SGL_RS07815at 1271.513 kb on + strand, within SGL_RS07815at 1271.721 kb on + strand, within SGL_RS07815at 1271.852 kb on - strand, within SGL_RS07815at 1271.886 kb on + strand, within SGL_RS07815at 1271.888 kb on + strand, within SGL_RS07815at 1271.894 kb on - strand, within SGL_RS07815

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,268,435 + +0.5
1,269,383 + -4.1
1,269,457 + -4.3
1,269,548 - -2.3
1,269,550 + -3.3
1,269,619 - SGL_RS07810 0.14 -4.2
1,269,640 - SGL_RS07810 0.15 -4.0
1,269,705 + SGL_RS07810 0.19 -4.2
1,269,738 + SGL_RS07810 0.21 -3.4
1,269,871 - SGL_RS07810 0.30 -5.0
1,270,089 - SGL_RS07810 0.44 -0.7
1,270,121 - SGL_RS07810 0.46 -0.7
1,270,121 - SGL_RS07810 0.46 -2.2
1,270,165 - SGL_RS07810 0.49 -4.1
1,270,165 - SGL_RS07810 0.49 -1.9
1,270,317 - SGL_RS07810 0.59 -2.0
1,270,330 - SGL_RS07810 0.59 -4.8
1,270,397 - SGL_RS07810 0.64 -3.4
1,270,414 - SGL_RS07810 0.65 -2.2
1,270,455 - SGL_RS07810 0.67 -2.7
1,270,476 + SGL_RS07810 0.69 -1.1
1,270,759 - SGL_RS07810 0.87 -3.0
1,270,938 + -2.3
1,270,953 - -3.9
1,270,985 + -2.8
1,270,993 - -1.4
1,271,079 - -0.9
1,271,079 - -2.4
1,271,086 + -0.7
1,271,094 - -1.1
1,271,123 + -1.4
1,271,166 + -1.2
1,271,247 - SGL_RS07815 0.15 -2.8
1,271,279 - SGL_RS07815 0.17 -1.0
1,271,308 - SGL_RS07815 0.20 -0.5
1,271,310 - SGL_RS07815 0.20 -1.1
1,271,324 - SGL_RS07815 0.21 -0.8
1,271,485 - SGL_RS07815 0.34 -3.9
1,271,495 - SGL_RS07815 0.35 -2.1
1,271,495 - SGL_RS07815 0.35 -0.8
1,271,500 - SGL_RS07815 0.36 -1.0
1,271,513 + SGL_RS07815 0.37 -1.7
1,271,721 + SGL_RS07815 0.54 -1.8
1,271,852 - SGL_RS07815 0.65 -0.7
1,271,886 + SGL_RS07815 0.68 -1.5
1,271,888 + SGL_RS07815 0.68 -0.9
1,271,894 - SGL_RS07815 0.68 -4.0

Or see this region's nucleotide sequence