Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07805 and SGL_RS07810 overlap by 4 nucleotides SGL_RS07810 and SGL_RS07815 are separated by 108 nucleotides
SGL_RS07805: SGL_RS07805 - methylenetetrahydrofolate reductase, at 1,268,388 to 1,269,410
_RS07805
SGL_RS07810: SGL_RS07810 - glycosyltransferase family 39 protein, at 1,269,407 to 1,270,960
_RS07810
SGL_RS07815: SGL_RS07815 - aminotransferase class V-fold PLP-dependent enzyme, at 1,271,069 to 1,272,274
_RS07815
Position (kb)
1269
1270
1271 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1268.435 kb on + strand at 1269.383 kb on + strand at 1269.457 kb on + strand at 1269.548 kb on - strand at 1269.550 kb on + strand at 1269.619 kb on - strand, within SGL_RS07810 at 1269.640 kb on - strand, within SGL_RS07810 at 1269.705 kb on + strand, within SGL_RS07810 at 1269.738 kb on + strand, within SGL_RS07810 at 1269.871 kb on - strand, within SGL_RS07810 at 1270.089 kb on - strand, within SGL_RS07810 at 1270.121 kb on - strand, within SGL_RS07810 at 1270.121 kb on - strand, within SGL_RS07810 at 1270.165 kb on - strand, within SGL_RS07810 at 1270.165 kb on - strand, within SGL_RS07810 at 1270.317 kb on - strand, within SGL_RS07810 at 1270.330 kb on - strand, within SGL_RS07810 at 1270.397 kb on - strand, within SGL_RS07810 at 1270.414 kb on - strand, within SGL_RS07810 at 1270.455 kb on - strand, within SGL_RS07810 at 1270.476 kb on + strand, within SGL_RS07810 at 1270.759 kb on - strand, within SGL_RS07810 at 1270.938 kb on + strand at 1270.953 kb on - strand at 1270.985 kb on + strand at 1270.993 kb on - strand at 1271.079 kb on - strand at 1271.079 kb on - strand at 1271.086 kb on + strand at 1271.094 kb on - strand at 1271.123 kb on + strand at 1271.166 kb on + strand at 1271.247 kb on - strand, within SGL_RS07815 at 1271.279 kb on - strand, within SGL_RS07815 at 1271.308 kb on - strand, within SGL_RS07815 at 1271.310 kb on - strand, within SGL_RS07815 at 1271.324 kb on - strand, within SGL_RS07815 at 1271.485 kb on - strand, within SGL_RS07815 at 1271.495 kb on - strand, within SGL_RS07815 at 1271.495 kb on - strand, within SGL_RS07815 at 1271.500 kb on - strand, within SGL_RS07815 at 1271.513 kb on + strand, within SGL_RS07815 at 1271.721 kb on + strand, within SGL_RS07815 at 1271.852 kb on - strand, within SGL_RS07815 at 1271.886 kb on + strand, within SGL_RS07815 at 1271.888 kb on + strand, within SGL_RS07815 at 1271.894 kb on - strand, within SGL_RS07815
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,268,435 + +0.5 1,269,383 + -4.1 1,269,457 + -4.3 1,269,548 - -2.3 1,269,550 + -3.3 1,269,619 - SGL_RS07810 0.14 -4.2 1,269,640 - SGL_RS07810 0.15 -4.0 1,269,705 + SGL_RS07810 0.19 -4.2 1,269,738 + SGL_RS07810 0.21 -3.4 1,269,871 - SGL_RS07810 0.30 -5.0 1,270,089 - SGL_RS07810 0.44 -0.7 1,270,121 - SGL_RS07810 0.46 -0.7 1,270,121 - SGL_RS07810 0.46 -2.2 1,270,165 - SGL_RS07810 0.49 -4.1 1,270,165 - SGL_RS07810 0.49 -1.9 1,270,317 - SGL_RS07810 0.59 -2.0 1,270,330 - SGL_RS07810 0.59 -4.8 1,270,397 - SGL_RS07810 0.64 -3.4 1,270,414 - SGL_RS07810 0.65 -2.2 1,270,455 - SGL_RS07810 0.67 -2.7 1,270,476 + SGL_RS07810 0.69 -1.1 1,270,759 - SGL_RS07810 0.87 -3.0 1,270,938 + -2.3 1,270,953 - -3.9 1,270,985 + -2.8 1,270,993 - -1.4 1,271,079 - -0.9 1,271,079 - -2.4 1,271,086 + -0.7 1,271,094 - -1.1 1,271,123 + -1.4 1,271,166 + -1.2 1,271,247 - SGL_RS07815 0.15 -2.8 1,271,279 - SGL_RS07815 0.17 -1.0 1,271,308 - SGL_RS07815 0.20 -0.5 1,271,310 - SGL_RS07815 0.20 -1.1 1,271,324 - SGL_RS07815 0.21 -0.8 1,271,485 - SGL_RS07815 0.34 -3.9 1,271,495 - SGL_RS07815 0.35 -2.1 1,271,495 - SGL_RS07815 0.35 -0.8 1,271,500 - SGL_RS07815 0.36 -1.0 1,271,513 + SGL_RS07815 0.37 -1.7 1,271,721 + SGL_RS07815 0.54 -1.8 1,271,852 - SGL_RS07815 0.65 -0.7 1,271,886 + SGL_RS07815 0.68 -1.5 1,271,888 + SGL_RS07815 0.68 -0.9 1,271,894 - SGL_RS07815 0.68 -4.0
Or see this region's nucleotide sequence