Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07575 and SGL_RS07580 are separated by 86 nucleotides SGL_RS07580 and SGL_RS07585 are separated by 119 nucleotides SGL_RS07585 and SGL_RS07590 are separated by 107 nucleotides
SGL_RS07575: SGL_RS07575 - D-alanine--D-alanine ligase family protein, at 1,224,777 to 1,225,841
_RS07575
SGL_RS07580: SGL_RS07580 - exopolysaccharide biosynthesis protein, at 1,225,928 to 1,226,566
_RS07580
SGL_RS07585: SGL_RS07585 - ATP-dependent Clp protease adapter ClpS, at 1,226,686 to 1,226,982
_RS07585
SGL_RS07590: SGL_RS07590 - hydrogenase maturation protease, at 1,227,090 to 1,227,563
_RS07590
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1226.003 kb on + strand, within SGL_RS07580 at 1226.204 kb on + strand, within SGL_RS07580 at 1226.204 kb on + strand, within SGL_RS07580 at 1226.233 kb on - strand, within SGL_RS07580 at 1226.233 kb on - strand, within SGL_RS07580 at 1226.252 kb on - strand, within SGL_RS07580 at 1226.313 kb on + strand, within SGL_RS07580 at 1226.568 kb on + strand at 1226.807 kb on + strand, within SGL_RS07585 at 1226.860 kb on + strand, within SGL_RS07585 at 1226.932 kb on - strand, within SGL_RS07585 at 1226.944 kb on - strand, within SGL_RS07585 at 1226.977 kb on + strand at 1226.999 kb on + strand at 1227.141 kb on - strand, within SGL_RS07590 at 1227.170 kb on - strand, within SGL_RS07590 at 1227.240 kb on + strand, within SGL_RS07590 at 1227.243 kb on - strand, within SGL_RS07590 at 1227.261 kb on + strand, within SGL_RS07590 at 1227.320 kb on + strand, within SGL_RS07590 at 1227.407 kb on - strand, within SGL_RS07590 at 1227.434 kb on + strand, within SGL_RS07590 at 1227.450 kb on + strand, within SGL_RS07590 at 1227.509 kb on + strand, within SGL_RS07590
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,226,003 + SGL_RS07580 0.12 -1.6 1,226,204 + SGL_RS07580 0.43 -4.7 1,226,204 + SGL_RS07580 0.43 -1.1 1,226,233 - SGL_RS07580 0.48 -3.4 1,226,233 - SGL_RS07580 0.48 -4.4 1,226,252 - SGL_RS07580 0.51 -4.4 1,226,313 + SGL_RS07580 0.60 -3.7 1,226,568 + +0.8 1,226,807 + SGL_RS07585 0.41 -0.1 1,226,860 + SGL_RS07585 0.59 +1.7 1,226,932 - SGL_RS07585 0.83 +0.6 1,226,944 - SGL_RS07585 0.87 +1.8 1,226,977 + +0.7 1,226,999 + -0.5 1,227,141 - SGL_RS07590 0.11 +0.0 1,227,170 - SGL_RS07590 0.17 -1.2 1,227,240 + SGL_RS07590 0.32 +1.1 1,227,243 - SGL_RS07590 0.32 -1.4 1,227,261 + SGL_RS07590 0.36 -2.0 1,227,320 + SGL_RS07590 0.49 -0.7 1,227,407 - SGL_RS07590 0.67 +1.0 1,227,434 + SGL_RS07590 0.73 +2.0 1,227,450 + SGL_RS07590 0.76 -0.1 1,227,509 + SGL_RS07590 0.88 +1.1
Or see this region's nucleotide sequence