Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07575

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07570 and SGL_RS07575 are separated by 130 nucleotidesSGL_RS07575 and SGL_RS07580 are separated by 86 nucleotidesSGL_RS07580 and SGL_RS07585 are separated by 119 nucleotides SGL_RS07570: SGL_RS07570 - ABC transporter permease, at 1,223,666 to 1,224,646 _RS07570 SGL_RS07575: SGL_RS07575 - D-alanine--D-alanine ligase family protein, at 1,224,777 to 1,225,841 _RS07575 SGL_RS07580: SGL_RS07580 - exopolysaccharide biosynthesis protein, at 1,225,928 to 1,226,566 _RS07580 SGL_RS07585: SGL_RS07585 - ATP-dependent Clp protease adapter ClpS, at 1,226,686 to 1,226,982 _RS07585 Position (kb) 1224 1225 1226Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1223.943 kb on + strand, within SGL_RS07570at 1224.246 kb on + strand, within SGL_RS07570at 1224.416 kb on - strand, within SGL_RS07570at 1224.429 kb on + strand, within SGL_RS07570at 1224.522 kb on + strand, within SGL_RS07570at 1224.569 kb on + strandat 1224.579 kb on - strandat 1226.003 kb on + strand, within SGL_RS07580at 1226.204 kb on + strand, within SGL_RS07580at 1226.204 kb on + strand, within SGL_RS07580at 1226.233 kb on - strand, within SGL_RS07580at 1226.233 kb on - strand, within SGL_RS07580at 1226.252 kb on - strand, within SGL_RS07580at 1226.313 kb on + strand, within SGL_RS07580at 1226.568 kb on + strandat 1226.807 kb on + strand, within SGL_RS07585

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,223,943 + SGL_RS07570 0.28 -4.1
1,224,246 + SGL_RS07570 0.59 -1.3
1,224,416 - SGL_RS07570 0.76 -4.8
1,224,429 + SGL_RS07570 0.78 -3.7
1,224,522 + SGL_RS07570 0.87 -1.8
1,224,569 + -5.4
1,224,579 - -5.5
1,226,003 + SGL_RS07580 0.12 -1.6
1,226,204 + SGL_RS07580 0.43 -4.7
1,226,204 + SGL_RS07580 0.43 -1.1
1,226,233 - SGL_RS07580 0.48 -3.4
1,226,233 - SGL_RS07580 0.48 -4.4
1,226,252 - SGL_RS07580 0.51 -4.4
1,226,313 + SGL_RS07580 0.60 -3.7
1,226,568 + +0.8
1,226,807 + SGL_RS07585 0.41 -0.1

Or see this region's nucleotide sequence