Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07565

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07550 and SGL_RS07555 are separated by 59 nucleotidesSGL_RS07555 and SGL_RS07560 are separated by 137 nucleotidesSGL_RS07560 and SGL_RS07565 are separated by 9 nucleotidesSGL_RS07565 and SGL_RS19580 are separated by 45 nucleotidesSGL_RS19580 and SGL_RS07570 are separated by 234 nucleotides SGL_RS07550: SGL_RS07550 - AarF/ABC1/UbiB kinase family protein, at 1,220,473 to 1,222,230 _RS07550 SGL_RS07555: SGL_RS07555 - hypothetical protein, at 1,222,290 to 1,222,472 _RS07555 SGL_RS07560: SGL_RS07560 - thylakoid lumen protein, at 1,222,610 to 1,222,927 _RS07560 SGL_RS07565: SGL_RS07565 - hypothetical protein, at 1,222,937 to 1,223,209 _RS07565 SGL_RS19580: SGL_RS19580 - hypothetical protein, at 1,223,255 to 1,223,431 _RS19580 SGL_RS07570: SGL_RS07570 - ABC transporter permease, at 1,223,666 to 1,224,646 _RS07570 Position (kb) 1222 1223 1224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1221.942 kb on + strand, within SGL_RS07550at 1221.942 kb on + strand, within SGL_RS07550at 1222.415 kb on + strand, within SGL_RS07555at 1222.613 kb on + strandat 1222.644 kb on + strand, within SGL_RS07560at 1222.652 kb on - strand, within SGL_RS07560at 1222.679 kb on - strand, within SGL_RS07560at 1222.774 kb on - strand, within SGL_RS07560at 1222.853 kb on + strand, within SGL_RS07560at 1222.863 kb on - strand, within SGL_RS07560at 1222.885 kb on + strand, within SGL_RS07560at 1222.986 kb on + strand, within SGL_RS07565at 1223.023 kb on - strand, within SGL_RS07565at 1223.040 kb on + strand, within SGL_RS07565at 1223.048 kb on - strand, within SGL_RS07565at 1223.114 kb on + strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.132 kb on + strand, within SGL_RS07565at 1223.158 kb on - strand, within SGL_RS07565at 1223.243 kb on - strandat 1223.344 kb on + strand, within SGL_RS19580at 1223.344 kb on + strand, within SGL_RS19580at 1223.356 kb on - strand, within SGL_RS19580at 1223.534 kb on - strandat 1223.549 kb on + strandat 1223.609 kb on + strandat 1223.943 kb on + strand, within SGL_RS07570

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,221,942 + SGL_RS07550 0.84 +1.8
1,221,942 + SGL_RS07550 0.84 +1.2
1,222,415 + SGL_RS07555 0.68 +1.0
1,222,613 + -0.3
1,222,644 + SGL_RS07560 0.11 +0.7
1,222,652 - SGL_RS07560 0.13 -0.4
1,222,679 - SGL_RS07560 0.22 +0.2
1,222,774 - SGL_RS07560 0.52 -1.5
1,222,853 + SGL_RS07560 0.76 -1.8
1,222,863 - SGL_RS07560 0.80 -3.9
1,222,885 + SGL_RS07560 0.86 -1.5
1,222,986 + SGL_RS07565 0.18 -1.4
1,223,023 - SGL_RS07565 0.32 -3.6
1,223,040 + SGL_RS07565 0.38 -4.2
1,223,048 - SGL_RS07565 0.41 -4.6
1,223,114 + SGL_RS07565 0.65 -2.1
1,223,122 - SGL_RS07565 0.68 -3.4
1,223,122 - SGL_RS07565 0.68 -1.8
1,223,132 + SGL_RS07565 0.71 -1.9
1,223,158 - SGL_RS07565 0.81 -4.1
1,223,243 - +0.3
1,223,344 + SGL_RS19580 0.50 +2.2
1,223,344 + SGL_RS19580 0.50 +2.8
1,223,356 - SGL_RS19580 0.57 +2.2
1,223,534 - -0.8
1,223,549 + -1.1
1,223,609 + +0.2
1,223,943 + SGL_RS07570 0.28 -4.1

Or see this region's nucleotide sequence