Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07550

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07540 and SGL_RS07545 are separated by 29 nucleotidesSGL_RS07545 and SGL_RS07550 are separated by 54 nucleotidesSGL_RS07550 and SGL_RS07555 are separated by 59 nucleotidesSGL_RS07555 and SGL_RS07560 are separated by 137 nucleotidesSGL_RS07560 and SGL_RS07565 are separated by 9 nucleotides SGL_RS07540: SGL_RS07540 - endonuclease MutS2, at 1,217,156 to 1,219,624 _RS07540 SGL_RS07545: SGL_RS07545 - serine/threonine-protein phosphatase, at 1,219,654 to 1,220,418 _RS07545 SGL_RS07550: SGL_RS07550 - AarF/ABC1/UbiB kinase family protein, at 1,220,473 to 1,222,230 _RS07550 SGL_RS07555: SGL_RS07555 - hypothetical protein, at 1,222,290 to 1,222,472 _RS07555 SGL_RS07560: SGL_RS07560 - thylakoid lumen protein, at 1,222,610 to 1,222,927 _RS07560 SGL_RS07565: SGL_RS07565 - hypothetical protein, at 1,222,937 to 1,223,209 _RS07565 Position (kb) 1220 1221 1222 1223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1219.632 kb on - strandat 1219.634 kb on - strandat 1219.660 kb on + strandat 1219.671 kb on + strandat 1219.765 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.833 kb on + strand, within SGL_RS07545at 1219.841 kb on - strand, within SGL_RS07545at 1219.928 kb on + strand, within SGL_RS07545at 1219.934 kb on + strand, within SGL_RS07545at 1219.942 kb on - strand, within SGL_RS07545at 1219.957 kb on - strand, within SGL_RS07545at 1220.109 kb on - strand, within SGL_RS07545at 1220.260 kb on + strand, within SGL_RS07545at 1220.322 kb on - strand, within SGL_RS07545at 1220.465 kb on - strandat 1220.595 kb on - strandat 1220.659 kb on - strand, within SGL_RS07550at 1220.690 kb on - strand, within SGL_RS07550at 1220.695 kb on - strand, within SGL_RS07550at 1220.732 kb on - strand, within SGL_RS07550at 1220.763 kb on - strand, within SGL_RS07550at 1220.828 kb on - strand, within SGL_RS07550at 1221.002 kb on - strand, within SGL_RS07550at 1221.089 kb on - strand, within SGL_RS07550at 1221.108 kb on - strand, within SGL_RS07550at 1221.198 kb on + strand, within SGL_RS07550at 1221.206 kb on - strand, within SGL_RS07550at 1221.301 kb on + strand, within SGL_RS07550at 1221.717 kb on - strand, within SGL_RS07550at 1221.722 kb on - strand, within SGL_RS07550at 1221.727 kb on - strand, within SGL_RS07550at 1221.778 kb on - strand, within SGL_RS07550at 1221.804 kb on - strand, within SGL_RS07550at 1221.926 kb on + strand, within SGL_RS07550at 1221.942 kb on + strand, within SGL_RS07550at 1221.942 kb on + strand, within SGL_RS07550at 1222.415 kb on + strand, within SGL_RS07555at 1222.613 kb on + strandat 1222.644 kb on + strand, within SGL_RS07560at 1222.652 kb on - strand, within SGL_RS07560at 1222.679 kb on - strand, within SGL_RS07560at 1222.774 kb on - strand, within SGL_RS07560at 1222.853 kb on + strand, within SGL_RS07560at 1222.863 kb on - strand, within SGL_RS07560at 1222.885 kb on + strand, within SGL_RS07560at 1222.986 kb on + strand, within SGL_RS07565at 1223.023 kb on - strand, within SGL_RS07565at 1223.040 kb on + strand, within SGL_RS07565at 1223.048 kb on - strand, within SGL_RS07565at 1223.114 kb on + strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.122 kb on - strand, within SGL_RS07565at 1223.132 kb on + strand, within SGL_RS07565at 1223.158 kb on - strand, within SGL_RS07565

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,219,632 - +0.9
1,219,634 - +0.2
1,219,660 + +1.4
1,219,671 + +1.1
1,219,765 + SGL_RS07545 0.15 +2.1
1,219,833 + SGL_RS07545 0.23 -1.4
1,219,833 + SGL_RS07545 0.23 -1.2
1,219,841 - SGL_RS07545 0.24 -1.4
1,219,928 + SGL_RS07545 0.36 -3.4
1,219,934 + SGL_RS07545 0.37 -0.9
1,219,942 - SGL_RS07545 0.38 -1.6
1,219,957 - SGL_RS07545 0.40 -1.0
1,220,109 - SGL_RS07545 0.59 -2.0
1,220,260 + SGL_RS07545 0.79 -0.3
1,220,322 - SGL_RS07545 0.87 -0.3
1,220,465 - +0.7
1,220,595 - +1.3
1,220,659 - SGL_RS07550 0.11 +1.9
1,220,690 - SGL_RS07550 0.12 +1.4
1,220,695 - SGL_RS07550 0.13 +2.1
1,220,732 - SGL_RS07550 0.15 +1.3
1,220,763 - SGL_RS07550 0.16 +0.0
1,220,828 - SGL_RS07550 0.20 +2.0
1,221,002 - SGL_RS07550 0.30 +0.5
1,221,089 - SGL_RS07550 0.35 +1.4
1,221,108 - SGL_RS07550 0.36 +1.0
1,221,198 + SGL_RS07550 0.41 +1.8
1,221,206 - SGL_RS07550 0.42 +0.0
1,221,301 + SGL_RS07550 0.47 +0.3
1,221,717 - SGL_RS07550 0.71 +2.2
1,221,722 - SGL_RS07550 0.71 +1.3
1,221,727 - SGL_RS07550 0.71 +1.4
1,221,778 - SGL_RS07550 0.74 +1.3
1,221,804 - SGL_RS07550 0.76 +1.8
1,221,926 + SGL_RS07550 0.83 +2.2
1,221,942 + SGL_RS07550 0.84 +1.8
1,221,942 + SGL_RS07550 0.84 +1.2
1,222,415 + SGL_RS07555 0.68 +1.0
1,222,613 + -0.3
1,222,644 + SGL_RS07560 0.11 +0.7
1,222,652 - SGL_RS07560 0.13 -0.4
1,222,679 - SGL_RS07560 0.22 +0.2
1,222,774 - SGL_RS07560 0.52 -1.5
1,222,853 + SGL_RS07560 0.76 -1.8
1,222,863 - SGL_RS07560 0.80 -3.9
1,222,885 + SGL_RS07560 0.86 -1.5
1,222,986 + SGL_RS07565 0.18 -1.4
1,223,023 - SGL_RS07565 0.32 -3.6
1,223,040 + SGL_RS07565 0.38 -4.2
1,223,048 - SGL_RS07565 0.41 -4.6
1,223,114 + SGL_RS07565 0.65 -2.1
1,223,122 - SGL_RS07565 0.68 -3.4
1,223,122 - SGL_RS07565 0.68 -1.8
1,223,132 + SGL_RS07565 0.71 -1.9
1,223,158 - SGL_RS07565 0.81 -4.1

Or see this region's nucleotide sequence