Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07265 and SGL_RS07270 are separated by 87 nucleotides SGL_RS07270 and SGL_RS07275 are separated by 76 nucleotides SGL_RS07275 and SGL_RS07280 are separated by 53 nucleotides SGL_RS07280 and SGL_RS07285 are separated by 119 nucleotides
SGL_RS07265: SGL_RS07265 - AarF/ABC1/UbiB kinase family protein, at 1,154,857 to 1,156,083
_RS07265
SGL_RS07270: SGL_RS07270 - hypothetical protein, at 1,156,171 to 1,156,503
_RS07270
SGL_RS07275: SGL_RS07275 - clan AA aspartic protease, at 1,156,580 to 1,156,975
_RS07275
SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909
_RS07280
SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804
_RS07285
Position (kb)
1157
1158
1159 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1156.304 kb on - strand, within SGL_RS07270 at 1157.226 kb on + strand, within SGL_RS07280 at 1157.868 kb on - strand, within SGL_RS07280 at 1157.985 kb on - strand, within SGL_RS07280 at 1158.470 kb on + strand, within SGL_RS07280 at 1158.691 kb on + strand, within SGL_RS07280 at 1158.719 kb on + strand, within SGL_RS07280 at 1159.082 kb on + strand at 1159.100 kb on - strand at 1159.482 kb on + strand, within SGL_RS07285 at 1159.502 kb on - strand, within SGL_RS07285 at 1159.594 kb on - strand, within SGL_RS07285 at 1159.594 kb on - strand, within SGL_RS07285 at 1159.747 kb on + strand, within SGL_RS07285 at 1159.767 kb on + strand, within SGL_RS07285 at 1159.844 kb on - strand, within SGL_RS07285 at 1159.876 kb on + strand, within SGL_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,156,304 - SGL_RS07270 0.40 -0.1 1,157,226 + SGL_RS07280 0.10 +2.5 1,157,868 - SGL_RS07280 0.45 -0.9 1,157,985 - SGL_RS07280 0.51 -0.3 1,158,470 + SGL_RS07280 0.77 -0.6 1,158,691 + SGL_RS07280 0.88 -1.1 1,158,719 + SGL_RS07280 0.90 +2.1 1,159,082 + -0.7 1,159,100 - -3.7 1,159,482 + SGL_RS07285 0.26 -1.6 1,159,502 - SGL_RS07285 0.27 -4.6 1,159,594 - SGL_RS07285 0.32 -4.2 1,159,594 - SGL_RS07285 0.32 -3.5 1,159,747 + SGL_RS07285 0.40 -4.6 1,159,767 + SGL_RS07285 0.42 -4.1 1,159,844 - SGL_RS07285 0.46 -4.3 1,159,876 + SGL_RS07285 0.48 -4.5
Or see this region's nucleotide sequence