Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07270

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07265 and SGL_RS07270 are separated by 87 nucleotidesSGL_RS07270 and SGL_RS07275 are separated by 76 nucleotidesSGL_RS07275 and SGL_RS07280 are separated by 53 nucleotides SGL_RS07265: SGL_RS07265 - AarF/ABC1/UbiB kinase family protein, at 1,154,857 to 1,156,083 _RS07265 SGL_RS07270: SGL_RS07270 - hypothetical protein, at 1,156,171 to 1,156,503 _RS07270 SGL_RS07275: SGL_RS07275 - clan AA aspartic protease, at 1,156,580 to 1,156,975 _RS07275 SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909 _RS07280 Position (kb) 1156 1157Strain fitness (log2 ratio) -1 0 1 2at 1155.190 kb on - strand, within SGL_RS07265at 1155.595 kb on - strand, within SGL_RS07265at 1155.779 kb on + strand, within SGL_RS07265at 1156.304 kb on - strand, within SGL_RS07270at 1157.226 kb on + strand, within SGL_RS07280

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,155,190 - SGL_RS07265 0.27 +1.0
1,155,595 - SGL_RS07265 0.60 -1.6
1,155,779 + SGL_RS07265 0.75 +0.2
1,156,304 - SGL_RS07270 0.40 -0.1
1,157,226 + SGL_RS07280 0.10 +2.5

Or see this region's nucleotide sequence