Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06810

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06800 and SGL_RS06805 are separated by 396 nucleotidesSGL_RS06805 and SGL_RS06810 are separated by 142 nucleotidesSGL_RS06810 and SGL_RS06815 are separated by 200 nucleotides SGL_RS06800: SGL_RS06800 - glutathione synthase, at 1,051,159 to 1,052,121 _RS06800 SGL_RS06805: SGL_RS06805 - hypothetical protein, at 1,052,518 to 1,052,784 _RS06805 SGL_RS06810: SGL_RS06810 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,052,927 to 1,053,754 _RS06810 SGL_RS06815: SGL_RS06815 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 1,053,955 to 1,055,547 _RS06815 Position (kb) 1052 1053 1054Strain fitness (log2 ratio) -2 -1 0 1 2at 1052.064 kb on + strandat 1052.699 kb on - strand, within SGL_RS06805at 1052.778 kb on + strandat 1052.778 kb on + strandat 1052.778 kb on + strandat 1052.786 kb on - strandat 1052.809 kb on + strandat 1052.925 kb on + strandat 1053.093 kb on - strand, within SGL_RS06810at 1053.492 kb on + strand, within SGL_RS06810at 1053.794 kb on - strandat 1053.796 kb on + strandat 1053.804 kb on + strandat 1053.804 kb on - strandat 1053.804 kb on - strandat 1053.852 kb on - strandat 1053.882 kb on + strandat 1054.067 kb on - strandat 1054.371 kb on + strand, within SGL_RS06815at 1054.488 kb on - strand, within SGL_RS06815at 1054.497 kb on + strand, within SGL_RS06815at 1054.574 kb on + strand, within SGL_RS06815at 1054.575 kb on - strand, within SGL_RS06815

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,052,064 + -2.6
1,052,699 - SGL_RS06805 0.68 -1.7
1,052,778 + -0.2
1,052,778 + -2.1
1,052,778 + +0.2
1,052,786 - -0.9
1,052,809 + -0.3
1,052,925 + -1.9
1,053,093 - SGL_RS06810 0.20 +1.8
1,053,492 + SGL_RS06810 0.68 +1.2
1,053,794 - -1.0
1,053,796 + +1.0
1,053,804 + -2.1
1,053,804 - -0.2
1,053,804 - +0.4
1,053,852 - -1.2
1,053,882 + +1.3
1,054,067 - +1.5
1,054,371 + SGL_RS06815 0.26 -1.5
1,054,488 - SGL_RS06815 0.33 -0.6
1,054,497 + SGL_RS06815 0.34 +1.8
1,054,574 + SGL_RS06815 0.39 +0.2
1,054,575 - SGL_RS06815 0.39 +1.9

Or see this region's nucleotide sequence