Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06780

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06770 and SGL_RS06775 are separated by 48 nucleotidesSGL_RS06775 and SGL_RS06780 overlap by 4 nucleotidesSGL_RS06780 and SGL_RS06785 are separated by 500 nucleotides SGL_RS06770: SGL_RS06770 - cytosine deaminase, at 1,047,005 to 1,048,357 _RS06770 SGL_RS06775: SGL_RS06775 - type II toxin-antitoxin system PemK/MazF family toxin, at 1,048,406 to 1,048,753 _RS06775 SGL_RS06780: SGL_RS06780 - hypothetical protein, at 1,048,750 to 1,049,016 _RS06780 SGL_RS06785: SGL_RS06785 - alpha/beta hydrolase, at 1,049,517 to 1,050,407 _RS06785 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1047.840 kb on + strand, within SGL_RS06770at 1047.848 kb on - strand, within SGL_RS06770at 1047.895 kb on + strand, within SGL_RS06770at 1047.931 kb on + strand, within SGL_RS06770at 1048.109 kb on + strand, within SGL_RS06770at 1048.339 kb on - strandat 1048.403 kb on + strandat 1048.456 kb on - strand, within SGL_RS06775at 1048.564 kb on - strand, within SGL_RS06775at 1048.615 kb on + strand, within SGL_RS06775at 1048.854 kb on + strand, within SGL_RS06780at 1048.861 kb on + strand, within SGL_RS06780at 1048.862 kb on - strand, within SGL_RS06780at 1048.935 kb on + strand, within SGL_RS06780at 1049.024 kb on - strandat 1049.026 kb on - strandat 1049.212 kb on + strandat 1049.641 kb on - strand, within SGL_RS06785at 1049.751 kb on + strand, within SGL_RS06785at 1049.763 kb on + strand, within SGL_RS06785at 1049.794 kb on + strand, within SGL_RS06785at 1049.794 kb on + strand, within SGL_RS06785at 1049.841 kb on + strand, within SGL_RS06785at 1049.864 kb on + strand, within SGL_RS06785at 1049.872 kb on - strand, within SGL_RS06785at 1049.945 kb on + strand, within SGL_RS06785at 1050.011 kb on - strand, within SGL_RS06785

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,047,840 + SGL_RS06770 0.62 -0.4
1,047,848 - SGL_RS06770 0.62 -0.9
1,047,895 + SGL_RS06770 0.66 -1.0
1,047,931 + SGL_RS06770 0.68 -0.7
1,048,109 + SGL_RS06770 0.82 -0.4
1,048,339 - -0.7
1,048,403 + -2.4
1,048,456 - SGL_RS06775 0.14 -4.1
1,048,564 - SGL_RS06775 0.45 -2.9
1,048,615 + SGL_RS06775 0.60 -0.4
1,048,854 + SGL_RS06780 0.39 -3.4
1,048,861 + SGL_RS06780 0.42 -0.8
1,048,862 - SGL_RS06780 0.42 -3.4
1,048,935 + SGL_RS06780 0.69 -3.7
1,049,024 - -3.8
1,049,026 - -2.7
1,049,212 + +1.8
1,049,641 - SGL_RS06785 0.14 -0.6
1,049,751 + SGL_RS06785 0.26 -2.5
1,049,763 + SGL_RS06785 0.28 -1.4
1,049,794 + SGL_RS06785 0.31 -0.8
1,049,794 + SGL_RS06785 0.31 -0.8
1,049,841 + SGL_RS06785 0.36 -0.7
1,049,864 + SGL_RS06785 0.39 -0.3
1,049,872 - SGL_RS06785 0.40 -2.4
1,049,945 + SGL_RS06785 0.48 +0.8
1,050,011 - SGL_RS06785 0.55 -4.8

Or see this region's nucleotide sequence