Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06730

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06720 and SGL_RS06725 are separated by 359 nucleotidesSGL_RS06725 and SGL_RS06730 are separated by 175 nucleotidesSGL_RS06730 and SGL_RS06735 are separated by 131 nucleotidesSGL_RS06735 and SGL_RS06740 are separated by 51 nucleotidesSGL_RS06740 and SGL_RS06745 are separated by 45 nucleotides SGL_RS06720: SGL_RS06720 - SH3 domain-containing protein, at 1,039,196 to 1,039,732 _RS06720 SGL_RS06725: SGL_RS06725 - hypothetical protein, at 1,040,092 to 1,040,355 _RS06725 SGL_RS06730: SGL_RS06730 - succinate dehydrogenase/fumarate reductase flavoprotein subunit, at 1,040,531 to 1,042,258 _RS06730 SGL_RS06735: SGL_RS06735 - PCP reductase family protein, at 1,042,390 to 1,042,557 _RS06735 SGL_RS06740: SGL_RS06740 - histidine triad nucleotide-binding protein, at 1,042,609 to 1,042,953 _RS06740 SGL_RS06745: SGL_RS06745 - alpha/beta fold hydrolase, at 1,042,999 to 1,043,880 _RS06745 Position (kb) 1040 1041 1042 1043Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1039.632 kb on - strand, within SGL_RS06720at 1039.644 kb on + strand, within SGL_RS06720at 1039.691 kb on - strandat 1039.691 kb on - strandat 1039.692 kb on + strandat 1039.858 kb on + strandat 1039.891 kb on + strandat 1039.899 kb on - strandat 1040.147 kb on - strand, within SGL_RS06725at 1040.185 kb on + strand, within SGL_RS06725at 1040.218 kb on - strand, within SGL_RS06725at 1040.248 kb on - strand, within SGL_RS06725at 1040.473 kb on + strandat 1040.613 kb on + strandat 1040.632 kb on + strandat 1040.734 kb on - strand, within SGL_RS06730at 1040.755 kb on + strand, within SGL_RS06730at 1041.175 kb on - strand, within SGL_RS06730at 1041.327 kb on + strand, within SGL_RS06730at 1041.559 kb on + strand, within SGL_RS06730at 1041.564 kb on + strand, within SGL_RS06730at 1041.736 kb on - strand, within SGL_RS06730at 1041.746 kb on + strand, within SGL_RS06730at 1041.746 kb on + strand, within SGL_RS06730at 1041.754 kb on - strand, within SGL_RS06730at 1041.927 kb on - strand, within SGL_RS06730at 1041.982 kb on - strand, within SGL_RS06730at 1042.046 kb on - strand, within SGL_RS06730at 1042.061 kb on - strand, within SGL_RS06730at 1042.170 kb on + strandat 1042.668 kb on - strand, within SGL_RS06740at 1042.690 kb on + strand, within SGL_RS06740at 1042.806 kb on + strand, within SGL_RS06740at 1042.839 kb on - strand, within SGL_RS06740at 1042.846 kb on - strand, within SGL_RS06740at 1042.955 kb on + strandat 1043.126 kb on + strand, within SGL_RS06745at 1043.170 kb on + strand, within SGL_RS06745at 1043.190 kb on - strand, within SGL_RS06745at 1043.200 kb on + strand, within SGL_RS06745at 1043.217 kb on - strand, within SGL_RS06745at 1043.244 kb on - strand, within SGL_RS06745

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,039,632 - SGL_RS06720 0.81 +1.6
1,039,644 + SGL_RS06720 0.83 -0.4
1,039,691 - -0.5
1,039,691 - -0.4
1,039,692 + +0.2
1,039,858 + +1.0
1,039,891 + -0.8
1,039,899 - -0.2
1,040,147 - SGL_RS06725 0.21 -4.2
1,040,185 + SGL_RS06725 0.35 -3.9
1,040,218 - SGL_RS06725 0.48 -2.7
1,040,248 - SGL_RS06725 0.59 -4.0
1,040,473 + -0.4
1,040,613 + -1.0
1,040,632 + -0.4
1,040,734 - SGL_RS06730 0.12 +0.6
1,040,755 + SGL_RS06730 0.13 -0.6
1,041,175 - SGL_RS06730 0.37 -1.9
1,041,327 + SGL_RS06730 0.46 -1.2
1,041,559 + SGL_RS06730 0.59 -0.2
1,041,564 + SGL_RS06730 0.60 -2.3
1,041,736 - SGL_RS06730 0.70 +0.1
1,041,746 + SGL_RS06730 0.70 -2.4
1,041,746 + SGL_RS06730 0.70 -1.0
1,041,754 - SGL_RS06730 0.71 +2.0
1,041,927 - SGL_RS06730 0.81 -1.6
1,041,982 - SGL_RS06730 0.84 -0.8
1,042,046 - SGL_RS06730 0.88 -1.3
1,042,061 - SGL_RS06730 0.89 -0.5
1,042,170 + -0.3
1,042,668 - SGL_RS06740 0.17 -1.0
1,042,690 + SGL_RS06740 0.23 +1.8
1,042,806 + SGL_RS06740 0.57 -1.6
1,042,839 - SGL_RS06740 0.67 -1.2
1,042,846 - SGL_RS06740 0.69 +0.4
1,042,955 + +0.5
1,043,126 + SGL_RS06745 0.14 -0.1
1,043,170 + SGL_RS06745 0.19 +0.6
1,043,190 - SGL_RS06745 0.22 +0.7
1,043,200 + SGL_RS06745 0.23 +0.7
1,043,217 - SGL_RS06745 0.25 +0.4
1,043,244 - SGL_RS06745 0.28 +0.2

Or see this region's nucleotide sequence