Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06065

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS06055 and SGL_RS06060 are separated by 35 nucleotidesSGL_RS06060 and SGL_RS06065 overlap by 8 nucleotidesSGL_RS06065 and SGL_RS06070 are separated by 11 nucleotides SGL_RS06055: SGL_RS06055 - bifunctional aldolase/short-chain dehydrogenase, at 891,276 to 893,249 _RS06055 SGL_RS06060: SGL_RS06060 - DUF433 domain-containing protein, at 893,285 to 893,590 _RS06060 SGL_RS06065: SGL_RS06065 - DUF5615 family PIN-like protein, at 893,583 to 893,972 _RS06065 SGL_RS06070: SGL_RS06070 - cobaltochelatase subunit CobN, at 893,984 to 897,262 _RS06070 Position (kb) 893 894Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 892.865 kb on + strand, within SGL_RS06055at 893.655 kb on + strand, within SGL_RS06065at 893.695 kb on - strand, within SGL_RS06065at 894.844 kb on + strand, within SGL_RS06070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
892,865 + SGL_RS06055 0.80 -0.1
893,655 + SGL_RS06065 0.18 -3.4
893,695 - SGL_RS06065 0.29 -5.7
894,844 + SGL_RS06070 0.26 +2.0

Or see this region's nucleotide sequence