Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05500 and SGL_RS05505 are separated by 681 nucleotides SGL_RS05505 and SGL_RS05510 are separated by 135 nucleotides
SGL_RS05500: SGL_RS05500 - ribonuclease R, at 777,066 to 779,411
_RS05500
SGL_RS05505: SGL_RS05505 - TIGR03279 family radical SAM protein, at 780,093 to 781,448
_RS05505
SGL_RS05510: SGL_RS05510 - PP2C family protein-serine/threonine phosphatase, at 781,584 to 783,011
_RS05510
Position (kb)
780
781
782 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 779.216 kb on + strand at 779.229 kb on - strand at 779.295 kb on + strand at 779.313 kb on - strand at 779.487 kb on - strand at 779.516 kb on + strand at 779.665 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.730 kb on + strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.738 kb on - strand at 779.836 kb on + strand at 779.893 kb on - strand at 779.898 kb on - strand at 779.902 kb on + strand at 779.957 kb on + strand at 779.987 kb on - strand at 780.046 kb on + strand at 780.064 kb on - strand at 780.069 kb on - strand at 780.084 kb on - strand at 780.168 kb on + strand at 780.203 kb on + strand at 780.207 kb on - strand at 780.274 kb on - strand, within SGL_RS05505 at 780.282 kb on - strand, within SGL_RS05505 at 780.328 kb on - strand, within SGL_RS05505 at 780.345 kb on + strand, within SGL_RS05505 at 780.345 kb on + strand, within SGL_RS05505 at 780.353 kb on - strand, within SGL_RS05505 at 780.517 kb on + strand, within SGL_RS05505 at 780.527 kb on + strand, within SGL_RS05505 at 780.535 kb on - strand, within SGL_RS05505 at 780.641 kb on + strand, within SGL_RS05505 at 780.687 kb on - strand, within SGL_RS05505 at 780.836 kb on + strand, within SGL_RS05505 at 780.863 kb on + strand, within SGL_RS05505 at 780.871 kb on - strand, within SGL_RS05505 at 780.927 kb on + strand, within SGL_RS05505 at 781.000 kb on + strand, within SGL_RS05505 at 781.013 kb on - strand, within SGL_RS05505 at 781.093 kb on + strand, within SGL_RS05505 at 781.179 kb on + strand, within SGL_RS05505 at 781.189 kb on - strand, within SGL_RS05505 at 781.341 kb on - strand at 781.341 kb on - strand at 781.361 kb on - strand at 781.372 kb on - strand at 781.411 kb on + strand at 781.429 kb on - strand at 781.429 kb on - strand at 781.563 kb on + strand at 782.093 kb on - strand, within SGL_RS05510
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 779,216 + -2.3 779,229 - -1.8 779,295 + +0.6 779,313 - -0.7 779,487 - +0.6 779,516 + -1.3 779,665 + +0.5 779,730 + +1.6 779,730 + +1.2 779,730 + +2.0 779,730 + -0.0 779,738 - +0.9 779,738 - -0.7 779,738 - +1.1 779,738 - -0.3 779,738 - +0.7 779,836 + +0.6 779,893 - +1.5 779,898 - +1.1 779,902 + -0.5 779,957 + +0.2 779,987 - -0.4 780,046 + -1.9 780,064 - +0.3 780,069 - +1.4 780,084 - +2.8 780,168 + +1.9 780,203 + +1.0 780,207 - +1.0 780,274 - SGL_RS05505 0.13 +3.2 780,282 - SGL_RS05505 0.14 +2.5 780,328 - SGL_RS05505 0.17 +2.0 780,345 + SGL_RS05505 0.19 +1.9 780,345 + SGL_RS05505 0.19 +2.2 780,353 - SGL_RS05505 0.19 +2.1 780,517 + SGL_RS05505 0.31 +2.3 780,527 + SGL_RS05505 0.32 +0.7 780,535 - SGL_RS05505 0.33 +1.8 780,641 + SGL_RS05505 0.40 +1.9 780,687 - SGL_RS05505 0.44 +2.8 780,836 + SGL_RS05505 0.55 +2.6 780,863 + SGL_RS05505 0.57 +1.9 780,871 - SGL_RS05505 0.57 +1.0 780,927 + SGL_RS05505 0.62 +2.1 781,000 + SGL_RS05505 0.67 +2.3 781,013 - SGL_RS05505 0.68 +2.8 781,093 + SGL_RS05505 0.74 +0.7 781,179 + SGL_RS05505 0.80 -0.9 781,189 - SGL_RS05505 0.81 +2.0 781,341 - +2.7 781,341 - +4.0 781,361 - +4.4 781,372 - +3.0 781,411 + +1.7 781,429 - +3.5 781,429 - +3.0 781,563 + +2.5 782,093 - SGL_RS05510 0.36 +0.4
Or see this region's nucleotide sequence