Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05505

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05500 and SGL_RS05505 are separated by 681 nucleotidesSGL_RS05505 and SGL_RS05510 are separated by 135 nucleotides SGL_RS05500: SGL_RS05500 - ribonuclease R, at 777,066 to 779,411 _RS05500 SGL_RS05505: SGL_RS05505 - TIGR03279 family radical SAM protein, at 780,093 to 781,448 _RS05505 SGL_RS05510: SGL_RS05510 - PP2C family protein-serine/threonine phosphatase, at 781,584 to 783,011 _RS05510 Position (kb) 780 781 782Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 779.216 kb on + strandat 779.229 kb on - strandat 779.295 kb on + strandat 779.313 kb on - strandat 779.487 kb on - strandat 779.516 kb on + strandat 779.665 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.730 kb on + strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.738 kb on - strandat 779.836 kb on + strandat 779.893 kb on - strandat 779.898 kb on - strandat 779.902 kb on + strandat 779.957 kb on + strandat 779.987 kb on - strandat 780.046 kb on + strandat 780.064 kb on - strandat 780.069 kb on - strandat 780.084 kb on - strandat 780.168 kb on + strandat 780.203 kb on + strandat 780.207 kb on - strandat 780.274 kb on - strand, within SGL_RS05505at 780.282 kb on - strand, within SGL_RS05505at 780.328 kb on - strand, within SGL_RS05505at 780.345 kb on + strand, within SGL_RS05505at 780.345 kb on + strand, within SGL_RS05505at 780.353 kb on - strand, within SGL_RS05505at 780.517 kb on + strand, within SGL_RS05505at 780.527 kb on + strand, within SGL_RS05505at 780.535 kb on - strand, within SGL_RS05505at 780.641 kb on + strand, within SGL_RS05505at 780.687 kb on - strand, within SGL_RS05505at 780.836 kb on + strand, within SGL_RS05505at 780.863 kb on + strand, within SGL_RS05505at 780.871 kb on - strand, within SGL_RS05505at 780.927 kb on + strand, within SGL_RS05505at 781.000 kb on + strand, within SGL_RS05505at 781.013 kb on - strand, within SGL_RS05505at 781.093 kb on + strand, within SGL_RS05505at 781.179 kb on + strand, within SGL_RS05505at 781.189 kb on - strand, within SGL_RS05505at 781.341 kb on - strandat 781.341 kb on - strandat 781.361 kb on - strandat 781.372 kb on - strandat 781.411 kb on + strandat 781.429 kb on - strandat 781.429 kb on - strandat 781.563 kb on + strandat 782.093 kb on - strand, within SGL_RS05510

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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779,216 + -2.3
779,229 - -1.8
779,295 + +0.6
779,313 - -0.7
779,487 - +0.6
779,516 + -1.3
779,665 + +0.5
779,730 + +1.6
779,730 + +1.2
779,730 + +2.0
779,730 + -0.0
779,738 - +0.9
779,738 - -0.7
779,738 - +1.1
779,738 - -0.3
779,738 - +0.7
779,836 + +0.6
779,893 - +1.5
779,898 - +1.1
779,902 + -0.5
779,957 + +0.2
779,987 - -0.4
780,046 + -1.9
780,064 - +0.3
780,069 - +1.4
780,084 - +2.8
780,168 + +1.9
780,203 + +1.0
780,207 - +1.0
780,274 - SGL_RS05505 0.13 +3.2
780,282 - SGL_RS05505 0.14 +2.5
780,328 - SGL_RS05505 0.17 +2.0
780,345 + SGL_RS05505 0.19 +1.9
780,345 + SGL_RS05505 0.19 +2.2
780,353 - SGL_RS05505 0.19 +2.1
780,517 + SGL_RS05505 0.31 +2.3
780,527 + SGL_RS05505 0.32 +0.7
780,535 - SGL_RS05505 0.33 +1.8
780,641 + SGL_RS05505 0.40 +1.9
780,687 - SGL_RS05505 0.44 +2.8
780,836 + SGL_RS05505 0.55 +2.6
780,863 + SGL_RS05505 0.57 +1.9
780,871 - SGL_RS05505 0.57 +1.0
780,927 + SGL_RS05505 0.62 +2.1
781,000 + SGL_RS05505 0.67 +2.3
781,013 - SGL_RS05505 0.68 +2.8
781,093 + SGL_RS05505 0.74 +0.7
781,179 + SGL_RS05505 0.80 -0.9
781,189 - SGL_RS05505 0.81 +2.0
781,341 - +2.7
781,341 - +4.0
781,361 - +4.4
781,372 - +3.0
781,411 + +1.7
781,429 - +3.5
781,429 - +3.0
781,563 + +2.5
782,093 - SGL_RS05510 0.36 +0.4

Or see this region's nucleotide sequence