Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04930

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS04920 and SGL_RS04925 are separated by 187 nucleotidesSGL_RS04925 and SGL_RS04930 are separated by 26 nucleotidesSGL_RS04930 and SGL_RS04935 are separated by 66 nucleotidesSGL_RS04935 and SGL_RS04940 are separated by 153 nucleotidesSGL_RS04940 and SGL_RS04945 are separated by 56 nucleotides SGL_RS04920: SGL_RS04920 - tyrosine--tRNA ligase, at 659,370 to 660,584 _RS04920 SGL_RS04925: SGL_RS04925 - hypothetical protein, at 660,772 to 661,125 _RS04925 SGL_RS04930: SGL_RS04930 - hypothetical protein, at 661,152 to 662,819 _RS04930 SGL_RS04935: SGL_RS04935 - S4 domain-containing protein, at 662,886 to 663,188 _RS04935 SGL_RS04940: SGL_RS04940 - single-stranded DNA-binding protein, at 663,342 to 663,731 _RS04940 SGL_RS04945: SGL_RS04945 - GIY-YIG nuclease family protein, at 663,788 to 664,315 _RS04945 Position (kb) 661 662 663Strain fitness (log2 ratio) -1 0 1 2 3 4at 661.040 kb on + strand, within SGL_RS04925at 661.232 kb on + strandat 661.379 kb on - strand, within SGL_RS04930at 661.499 kb on + strand, within SGL_RS04930at 662.912 kb on + strandat 662.912 kb on + strandat 662.953 kb on - strand, within SGL_RS04935at 663.023 kb on + strand, within SGL_RS04935at 663.026 kb on + strand, within SGL_RS04935at 663.096 kb on - strand, within SGL_RS04935at 663.136 kb on + strand, within SGL_RS04935at 663.262 kb on + strandat 663.668 kb on + strand, within SGL_RS04940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
661,040 + SGL_RS04925 0.76 -0.6
661,232 + +0.3
661,379 - SGL_RS04930 0.14 +1.1
661,499 + SGL_RS04930 0.21 +1.2
662,912 + +0.2
662,912 + +1.1
662,953 - SGL_RS04935 0.22 -0.7
663,023 + SGL_RS04935 0.45 +0.9
663,026 + SGL_RS04935 0.46 -1.1
663,096 - SGL_RS04935 0.69 +0.3
663,136 + SGL_RS04935 0.83 +1.9
663,262 + -0.0
663,668 + SGL_RS04940 0.84 +4.3

Or see this region's nucleotide sequence