Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04735 and SGL_RS04740 overlap by 4 nucleotides SGL_RS04740 and SGL_RS04745 are separated by 264 nucleotides SGL_RS04745 and SGL_RS04750 are separated by 131 nucleotides SGL_RS04750 and SGL_RS04755 are separated by 102 nucleotides
SGL_RS04735: SGL_RS04735 - hypothetical protein, at 614,841 to 615,269
_RS04735
SGL_RS04740: SGL_RS04740 - DUF1036 domain-containing protein, at 615,266 to 615,703
_RS04740
SGL_RS04745: SGL_RS04745 - STAS domain-containing protein, at 615,968 to 616,324
_RS04745
SGL_RS04750: SGL_RS04750 - hypothetical protein, at 616,456 to 616,809
_RS04750
SGL_RS04755: SGL_RS04755 - hypothetical protein, at 616,912 to 617,178
_RS04755
Position (kb) 615
616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 614.989 kb on - strand, within SGL_RS04735 at 615.030 kb on - strand, within SGL_RS04735 at 615.108 kb on - strand, within SGL_RS04735 at 615.210 kb on - strand, within SGL_RS04735 at 615.337 kb on - strand, within SGL_RS04740 at 615.484 kb on - strand, within SGL_RS04740 at 615.484 kb on - strand, within SGL_RS04740 at 615.497 kb on + strand, within SGL_RS04740 at 615.504 kb on - strand, within SGL_RS04740 at 615.506 kb on - strand, within SGL_RS04740 at 615.506 kb on - strand, within SGL_RS04740 at 615.508 kb on + strand, within SGL_RS04740 at 615.566 kb on + strand, within SGL_RS04740 at 615.574 kb on - strand, within SGL_RS04740 at 615.711 kb on + strand at 615.748 kb on + strand at 615.748 kb on + strand at 615.781 kb on + strand at 615.789 kb on - strand at 615.789 kb on - strand at 616.013 kb on + strand, within SGL_RS04745 at 616.183 kb on + strand, within SGL_RS04745 at 616.817 kb on + strand at 616.817 kb on + strand at 616.817 kb on + strand at 616.825 kb on - strand at 616.877 kb on + strand at 616.996 kb on + strand, within SGL_RS04755
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 614,989 - SGL_RS04735 0.34 +4.8 615,030 - SGL_RS04735 0.44 +5.7 615,108 - SGL_RS04735 0.62 +4.1 615,210 - SGL_RS04735 0.86 +5.7 615,337 - SGL_RS04740 0.16 -0.7 615,484 - SGL_RS04740 0.50 -1.1 615,484 - SGL_RS04740 0.50 -2.8 615,497 + SGL_RS04740 0.53 -0.3 615,504 - SGL_RS04740 0.54 -0.3 615,506 - SGL_RS04740 0.55 -1.6 615,506 - SGL_RS04740 0.55 -0.6 615,508 + SGL_RS04740 0.55 -0.2 615,566 + SGL_RS04740 0.68 +0.2 615,574 - SGL_RS04740 0.70 +1.2 615,711 + +0.2 615,748 + -0.9 615,748 + -0.3 615,781 + -1.0 615,789 - -1.7 615,789 - +0.6 616,013 + SGL_RS04745 0.13 -3.8 616,183 + SGL_RS04745 0.60 -3.0 616,817 + -0.4 616,817 + -1.7 616,817 + +0.6 616,825 - +1.1 616,877 + +0.6 616,996 + SGL_RS04755 0.31 +1.0
Or see this region's nucleotide sequence