Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04325 and SGL_RS04330 are separated by 139 nucleotides SGL_RS04330 and SGL_RS04335 are separated by 28 nucleotides SGL_RS04335 and SGL_RS04340 are separated by 210 nucleotides
SGL_RS04325: SGL_RS04325 - CHAT domain-containing protein, at 524,382 to 529,595
_RS04325
SGL_RS04330: SGL_RS04330 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 529,735 to 530,688
_RS04330
SGL_RS04335: SGL_RS04335 - GNAT family N-acetyltransferase, at 530,717 to 531,235
_RS04335
SGL_RS04340: SGL_RS04340 - type I glutamate--ammonia ligase, at 531,446 to 532,867
_RS04340
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 528.829 kb on + strand, within SGL_RS04325 at 528.923 kb on + strand, within SGL_RS04325 at 529.067 kb on - strand, within SGL_RS04325 at 529.072 kb on - strand, within SGL_RS04325 at 529.194 kb on + strand at 529.263 kb on + strand at 529.340 kb on + strand at 529.391 kb on + strand at 529.397 kb on + strand at 529.399 kb on - strand at 529.400 kb on - strand at 529.405 kb on - strand at 529.406 kb on - strand at 529.423 kb on - strand at 529.425 kb on + strand at 529.428 kb on - strand at 529.438 kb on - strand at 529.521 kb on - strand at 529.567 kb on + strand at 529.575 kb on + strand at 529.581 kb on - strand at 529.583 kb on - strand at 529.761 kb on + strand at 530.141 kb on - strand, within SGL_RS04330 at 530.518 kb on - strand, within SGL_RS04330 at 530.806 kb on + strand, within SGL_RS04335 at 530.806 kb on + strand, within SGL_RS04335 at 530.814 kb on - strand, within SGL_RS04335 at 530.895 kb on + strand, within SGL_RS04335 at 530.966 kb on + strand, within SGL_RS04335 at 530.974 kb on + strand, within SGL_RS04335 at 531.193 kb on - strand at 531.337 kb on - strand at 531.395 kb on + strand at 531.493 kb on + strand at 531.539 kb on - strand at 531.575 kb on + strand at 531.585 kb on - strand at 531.620 kb on - strand, within SGL_RS04340 at 531.664 kb on + strand, within SGL_RS04340
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 528,829 + SGL_RS04325 0.85 +0.6 528,923 + SGL_RS04325 0.87 -1.2 529,067 - SGL_RS04325 0.90 -0.3 529,072 - SGL_RS04325 0.90 +1.7 529,194 + -0.5 529,263 + -0.0 529,340 + -0.4 529,391 + -0.1 529,397 + +0.7 529,399 - -0.3 529,400 - -0.3 529,405 - +0.5 529,406 - -1.0 529,423 - -0.5 529,425 + +0.6 529,428 - -0.4 529,438 - +0.2 529,521 - -0.6 529,567 + -0.5 529,575 + +0.5 529,581 - +0.5 529,583 - +1.0 529,761 + -1.4 530,141 - SGL_RS04330 0.43 -0.0 530,518 - SGL_RS04330 0.82 -0.2 530,806 + SGL_RS04335 0.17 -2.5 530,806 + SGL_RS04335 0.17 -2.8 530,814 - SGL_RS04335 0.19 -1.0 530,895 + SGL_RS04335 0.34 -1.4 530,966 + SGL_RS04335 0.48 -2.8 530,974 + SGL_RS04335 0.50 -0.8 531,193 - -3.2 531,337 - +0.1 531,395 + +0.7 531,493 + +1.5 531,539 - +1.3 531,575 + -0.7 531,585 - +1.1 531,620 - SGL_RS04340 0.12 +1.4 531,664 + SGL_RS04340 0.15 -1.8
Or see this region's nucleotide sequence