Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03830

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03825 and SGL_RS03830 are separated by 130 nucleotidesSGL_RS03830 and SGL_RS20115 are separated by 32 nucleotidesSGL_RS20115 and SGL_RS03840 are separated by 168 nucleotides SGL_RS03825: SGL_RS03825 - ExeM/NucH family extracellular endonuclease, at 404,545 to 410,184 _RS03825 SGL_RS03830: SGL_RS03830 - choice-of-anchor I family protein, at 410,315 to 414,544 _RS03830 SGL_RS20115: SGL_RS20115 - hypothetical protein, at 414,577 to 414,702 _RS20115 SGL_RS03840: SGL_RS03840 - adenylyl-sulfate kinase, at 414,871 to 415,404 _RS03840 Position (kb) 410 411 412 413 414 415Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 409.323 kb on - strand, within SGL_RS03825at 409.323 kb on - strand, within SGL_RS03825at 409.347 kb on - strand, within SGL_RS03825at 409.419 kb on + strand, within SGL_RS03825at 409.421 kb on + strand, within SGL_RS03825at 409.507 kb on - strand, within SGL_RS03825at 409.591 kb on - strand, within SGL_RS03825at 409.609 kb on + strand, within SGL_RS03825at 409.692 kb on + strandat 409.700 kb on + strandat 409.700 kb on - strandat 409.740 kb on - strandat 409.763 kb on - strandat 409.841 kb on - strandat 410.034 kb on - strandat 410.039 kb on - strandat 410.039 kb on - strandat 410.117 kb on - strandat 410.339 kb on + strandat 410.342 kb on - strandat 410.344 kb on + strandat 410.349 kb on + strandat 410.557 kb on + strandat 410.561 kb on - strandat 410.973 kb on + strand, within SGL_RS03830at 411.083 kb on - strand, within SGL_RS03830at 411.094 kb on - strand, within SGL_RS03830at 411.225 kb on - strand, within SGL_RS03830at 411.243 kb on + strand, within SGL_RS03830at 411.243 kb on + strand, within SGL_RS03830at 411.402 kb on - strand, within SGL_RS03830at 411.402 kb on - strand, within SGL_RS03830at 411.460 kb on + strand, within SGL_RS03830at 411.472 kb on + strand, within SGL_RS03830at 411.491 kb on - strand, within SGL_RS03830at 411.519 kb on - strand, within SGL_RS03830at 411.545 kb on + strand, within SGL_RS03830at 411.716 kb on + strand, within SGL_RS03830at 411.854 kb on - strand, within SGL_RS03830at 411.919 kb on - strand, within SGL_RS03830at 411.942 kb on - strand, within SGL_RS03830at 411.948 kb on - strand, within SGL_RS03830at 411.956 kb on + strand, within SGL_RS03830at 412.059 kb on + strand, within SGL_RS03830at 412.071 kb on + strand, within SGL_RS03830at 412.071 kb on + strand, within SGL_RS03830at 412.085 kb on - strand, within SGL_RS03830at 412.128 kb on - strand, within SGL_RS03830at 412.142 kb on - strand, within SGL_RS03830at 412.329 kb on + strand, within SGL_RS03830at 412.513 kb on + strand, within SGL_RS03830at 412.539 kb on + strand, within SGL_RS03830at 412.562 kb on - strand, within SGL_RS03830at 412.564 kb on + strand, within SGL_RS03830at 412.581 kb on - strand, within SGL_RS03830at 412.716 kb on - strand, within SGL_RS03830at 412.768 kb on + strand, within SGL_RS03830at 412.790 kb on - strand, within SGL_RS03830at 412.809 kb on - strand, within SGL_RS03830at 412.931 kb on - strand, within SGL_RS03830at 412.979 kb on - strand, within SGL_RS03830at 412.986 kb on - strand, within SGL_RS03830at 413.016 kb on - strand, within SGL_RS03830at 413.036 kb on + strand, within SGL_RS03830at 413.106 kb on - strand, within SGL_RS03830at 413.106 kb on - strand, within SGL_RS03830at 413.183 kb on + strand, within SGL_RS03830at 413.183 kb on + strand, within SGL_RS03830at 413.191 kb on - strand, within SGL_RS03830at 413.326 kb on - strand, within SGL_RS03830at 413.435 kb on + strand, within SGL_RS03830at 413.439 kb on + strand, within SGL_RS03830at 413.472 kb on + strand, within SGL_RS03830at 413.480 kb on - strand, within SGL_RS03830at 413.480 kb on - strand, within SGL_RS03830at 413.506 kb on - strand, within SGL_RS03830at 413.561 kb on + strand, within SGL_RS03830at 413.574 kb on + strand, within SGL_RS03830at 413.587 kb on + strand, within SGL_RS03830at 413.610 kb on + strand, within SGL_RS03830at 413.681 kb on - strand, within SGL_RS03830at 413.756 kb on + strand, within SGL_RS03830at 413.756 kb on + strand, within SGL_RS03830at 413.798 kb on + strand, within SGL_RS03830at 413.826 kb on + strand, within SGL_RS03830at 413.834 kb on - strand, within SGL_RS03830at 413.853 kb on + strand, within SGL_RS03830at 413.876 kb on - strand, within SGL_RS03830at 414.095 kb on - strand, within SGL_RS03830at 414.300 kb on + strandat 414.308 kb on - strandat 414.308 kb on - strandat 414.318 kb on + strandat 414.387 kb on + strandat 414.387 kb on + strandat 414.395 kb on - strandat 414.596 kb on - strand, within SGL_RS20115at 414.598 kb on + strand, within SGL_RS20115at 414.612 kb on - strand, within SGL_RS20115at 414.798 kb on + strandat 414.877 kb on - strandat 414.884 kb on + strandat 414.968 kb on - strand, within SGL_RS03840at 415.201 kb on - strand, within SGL_RS03840at 415.323 kb on - strand, within SGL_RS03840at 415.344 kb on + strand, within SGL_RS03840at 415.418 kb on - strandat 415.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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409,323 - SGL_RS03825 0.85 -0.1
409,323 - SGL_RS03825 0.85 -0.1
409,347 - SGL_RS03825 0.85 -2.6
409,419 + SGL_RS03825 0.86 -0.4
409,421 + SGL_RS03825 0.86 -0.6
409,507 - SGL_RS03825 0.88 +0.5
409,591 - SGL_RS03825 0.89 -1.2
409,609 + SGL_RS03825 0.90 -0.9
409,692 + +0.4
409,700 + -0.1
409,700 - -1.6
409,740 - -0.3
409,763 - -1.4
409,841 - +0.8
410,034 - -0.4
410,039 - -0.2
410,039 - +0.8
410,117 - -0.3
410,339 + -1.6
410,342 - -1.4
410,344 + +0.6
410,349 + -1.9
410,557 + +0.4
410,561 - -1.9
410,973 + SGL_RS03830 0.16 -0.9
411,083 - SGL_RS03830 0.18 -1.8
411,094 - SGL_RS03830 0.18 -1.3
411,225 - SGL_RS03830 0.22 -0.2
411,243 + SGL_RS03830 0.22 -0.6
411,243 + SGL_RS03830 0.22 -0.2
411,402 - SGL_RS03830 0.26 -0.9
411,402 - SGL_RS03830 0.26 -0.6
411,460 + SGL_RS03830 0.27 -0.9
411,472 + SGL_RS03830 0.27 +0.4
411,491 - SGL_RS03830 0.28 -1.8
411,519 - SGL_RS03830 0.28 -0.7
411,545 + SGL_RS03830 0.29 -0.8
411,716 + SGL_RS03830 0.33 +0.0
411,854 - SGL_RS03830 0.36 -1.5
411,919 - SGL_RS03830 0.38 -2.4
411,942 - SGL_RS03830 0.38 -1.6
411,948 - SGL_RS03830 0.39 +0.4
411,956 + SGL_RS03830 0.39 +1.0
412,059 + SGL_RS03830 0.41 -0.1
412,071 + SGL_RS03830 0.42 -0.3
412,071 + SGL_RS03830 0.42 -0.4
412,085 - SGL_RS03830 0.42 -0.3
412,128 - SGL_RS03830 0.43 -0.3
412,142 - SGL_RS03830 0.43 -2.9
412,329 + SGL_RS03830 0.48 -1.4
412,513 + SGL_RS03830 0.52 -1.6
412,539 + SGL_RS03830 0.53 -2.0
412,562 - SGL_RS03830 0.53 -0.8
412,564 + SGL_RS03830 0.53 -0.1
412,581 - SGL_RS03830 0.54 -2.1
412,716 - SGL_RS03830 0.57 -0.4
412,768 + SGL_RS03830 0.58 -1.2
412,790 - SGL_RS03830 0.59 -0.3
412,809 - SGL_RS03830 0.59 -1.3
412,931 - SGL_RS03830 0.62 +0.7
412,979 - SGL_RS03830 0.63 -0.8
412,986 - SGL_RS03830 0.63 -1.2
413,016 - SGL_RS03830 0.64 -1.4
413,036 + SGL_RS03830 0.64 -1.4
413,106 - SGL_RS03830 0.66 +0.5
413,106 - SGL_RS03830 0.66 -0.1
413,183 + SGL_RS03830 0.68 -0.8
413,183 + SGL_RS03830 0.68 +0.8
413,191 - SGL_RS03830 0.68 +3.4
413,326 - SGL_RS03830 0.71 -2.1
413,435 + SGL_RS03830 0.74 +0.3
413,439 + SGL_RS03830 0.74 +0.0
413,472 + SGL_RS03830 0.75 +0.3
413,480 - SGL_RS03830 0.75 +0.4
413,480 - SGL_RS03830 0.75 -1.9
413,506 - SGL_RS03830 0.75 +3.6
413,561 + SGL_RS03830 0.77 -0.3
413,574 + SGL_RS03830 0.77 -0.2
413,587 + SGL_RS03830 0.77 -0.2
413,610 + SGL_RS03830 0.78 -0.4
413,681 - SGL_RS03830 0.80 +1.0
413,756 + SGL_RS03830 0.81 +0.1
413,756 + SGL_RS03830 0.81 -0.5
413,798 + SGL_RS03830 0.82 -0.6
413,826 + SGL_RS03830 0.83 +0.7
413,834 - SGL_RS03830 0.83 -0.4
413,853 + SGL_RS03830 0.84 -0.2
413,876 - SGL_RS03830 0.84 +0.4
414,095 - SGL_RS03830 0.89 +0.1
414,300 + +0.8
414,308 - +0.7
414,308 - -0.9
414,318 + -0.4
414,387 + -1.5
414,387 + -3.1
414,395 - -2.2
414,596 - SGL_RS20115 0.15 -0.4
414,598 + SGL_RS20115 0.17 +0.1
414,612 - SGL_RS20115 0.28 -1.3
414,798 + -3.8
414,877 - -5.5
414,884 + -0.7
414,968 - SGL_RS03840 0.18 -1.1
415,201 - SGL_RS03840 0.62 -0.1
415,323 - SGL_RS03840 0.85 -1.0
415,344 + SGL_RS03840 0.89 -1.0
415,418 - +0.4
415,418 - -4.0

Or see this region's nucleotide sequence