Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03690 and SGL_RS03695 are separated by 69 nucleotides SGL_RS03695 and SGL_RS03700 overlap by 4 nucleotides SGL_RS03700 and SGL_RS03705 are separated by 75 nucleotides SGL_RS03705 and SGL_RS18675 are separated by 33 nucleotides SGL_RS18675 and SGL_RS03715 are separated by 22 nucleotides SGL_RS03715 and SGL_RS03720 overlap by 4 nucleotides
SGL_RS03690: SGL_RS03690 - glycosyltransferase, at 381,177 to 382,337
_RS03690
SGL_RS03695: SGL_RS03695 - type II toxin-antitoxin system HicB family antitoxin, at 382,407 to 382,646
_RS03695
SGL_RS03700: SGL_RS03700 - type II toxin-antitoxin system HicA family toxin, at 382,643 to 382,873
_RS03700
SGL_RS03705: SGL_RS03705 - UDP-glucose 4-epimerase, at 382,949 to 383,266
_RS03705
SGL_RS18675: SGL_RS18675 - hypothetical protein, at 383,300 to 383,794
_RS18675
SGL_RS03715: SGL_RS03715 - hypothetical protein, at 383,817 to 384,053
_RS03715
SGL_RS03720: SGL_RS03720 - DUF2283 domain-containing protein, at 384,050 to 384,247
_RS03720
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 381.953 kb on + strand, within SGL_RS03690 at 381.953 kb on + strand, within SGL_RS03690 at 381.994 kb on - strand, within SGL_RS03690 at 382.002 kb on + strand, within SGL_RS03690 at 382.089 kb on + strand, within SGL_RS03690 at 382.135 kb on + strand, within SGL_RS03690 at 382.140 kb on - strand, within SGL_RS03690 at 382.143 kb on - strand, within SGL_RS03690 at 382.210 kb on + strand, within SGL_RS03690 at 382.223 kb on + strand at 382.281 kb on - strand at 382.281 kb on - strand at 382.780 kb on - strand, within SGL_RS03700 at 382.921 kb on + strand at 382.960 kb on - strand at 382.960 kb on - strand at 382.960 kb on - strand at 382.983 kb on - strand, within SGL_RS03705 at 382.988 kb on - strand, within SGL_RS03705 at 383.217 kb on - strand, within SGL_RS03705 at 383.318 kb on + strand at 383.371 kb on - strand, within SGL_RS18675 at 383.481 kb on + strand, within SGL_RS18675 at 383.884 kb on + strand, within SGL_RS03715
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 381,953 + SGL_RS03690 0.67 -3.7 381,953 + SGL_RS03690 0.67 -2.4 381,994 - SGL_RS03690 0.70 -3.2 382,002 + SGL_RS03690 0.71 -3.2 382,089 + SGL_RS03690 0.79 -3.6 382,135 + SGL_RS03690 0.83 -3.3 382,140 - SGL_RS03690 0.83 -3.6 382,143 - SGL_RS03690 0.83 -3.9 382,210 + SGL_RS03690 0.89 -3.3 382,223 + -1.8 382,281 - -3.4 382,281 - -2.9 382,780 - SGL_RS03700 0.59 +1.1 382,921 + +1.2 382,960 - -0.2 382,960 - +1.4 382,960 - +0.0 382,983 - SGL_RS03705 0.11 +0.6 382,988 - SGL_RS03705 0.12 +0.2 383,217 - SGL_RS03705 0.84 +0.0 383,318 + -1.0 383,371 - SGL_RS18675 0.14 -0.7 383,481 + SGL_RS18675 0.37 -0.2 383,884 + SGL_RS03715 0.28 +1.7
Or see this region's nucleotide sequence