Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03625

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03620 and SGL_RS03625 are separated by 21 nucleotidesSGL_RS03625 and SGL_RS03630 are separated by 238 nucleotides SGL_RS03620: SGL_RS03620 - glycosyltransferase, at 365,716 to 367,785 _RS03620 SGL_RS03625: SGL_RS03625 - glycosyltransferase family 1 protein, at 367,807 to 368,910 _RS03625 SGL_RS03630: SGL_RS03630 - glycosyltransferase family 2 protein, at 369,149 to 370,219 _RS03630 Position (kb) 367 368 369Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 367.833 kb on - strandat 367.966 kb on - strand, within SGL_RS03625at 368.195 kb on - strand, within SGL_RS03625at 368.252 kb on + strand, within SGL_RS03625at 368.606 kb on - strand, within SGL_RS03625at 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.217 kb on + strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.225 kb on - strandat 369.745 kb on - strand, within SGL_RS03630at 369.786 kb on + strand, within SGL_RS03630at 369.837 kb on + strand, within SGL_RS03630at 369.907 kb on + strand, within SGL_RS03630

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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367,833 - -3.8
367,966 - SGL_RS03625 0.14 -3.9
368,195 - SGL_RS03625 0.35 -1.5
368,252 + SGL_RS03625 0.40 -8.3
368,606 - SGL_RS03625 0.72 -3.1
369,217 + -2.4
369,217 + -2.8
369,217 + -3.7
369,217 + -4.2
369,217 + -4.5
369,225 - -3.4
369,225 - -2.9
369,225 - -3.4
369,225 - -3.7
369,225 - -4.1
369,225 - +0.8
369,745 - SGL_RS03630 0.56 -0.5
369,786 + SGL_RS03630 0.59 -2.3
369,837 + SGL_RS03630 0.64 -3.0
369,907 + SGL_RS03630 0.71 -5.3

Or see this region's nucleotide sequence