Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03595 and SGL_RS03600 are separated by 69 nucleotides SGL_RS03600 and SGL_RS03605 are separated by 202 nucleotides SGL_RS03605 and SGL_RS03610 are separated by 80 nucleotides
SGL_RS03595: SGL_RS03595 - NAD-dependent epimerase/dehydratase family protein, at 362,185 to 363,420
_RS03595
SGL_RS03600: SGL_RS03600 - class I SAM-dependent methyltransferase, at 363,490 to 364,218
_RS03600
SGL_RS03605: SGL_RS03605 - cephalosporin hydroxylase family protein, at 364,421 to 364,996
_RS03605
SGL_RS03610: SGL_RS03610 - hypothetical protein, at 365,077 to 365,283
_RS03610
Position (kb) 363
364
365 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 362.794 kb on - strand, within SGL_RS03595 at 363.552 kb on - strand at 364.062 kb on - strand, within SGL_RS03600 at 364.102 kb on + strand, within SGL_RS03600 at 364.350 kb on - strand at 364.385 kb on - strand at 364.425 kb on - strand at 364.457 kb on + strand at 364.523 kb on - strand, within SGL_RS03605 at 364.686 kb on - strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.775 kb on + strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.783 kb on - strand, within SGL_RS03605 at 364.855 kb on + strand, within SGL_RS03605 at 364.863 kb on - strand, within SGL_RS03605 at 364.870 kb on + strand, within SGL_RS03605 at 364.876 kb on + strand, within SGL_RS03605 at 365.214 kb on - strand, within SGL_RS03610
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 362,794 - SGL_RS03595 0.49 -0.6 363,552 - -4.6 364,062 - SGL_RS03600 0.78 -1.2 364,102 + SGL_RS03600 0.84 +0.1 364,350 - -3.7 364,385 - -4.5 364,425 - +0.3 364,457 + -2.2 364,523 - SGL_RS03605 0.18 -1.1 364,686 - SGL_RS03605 0.46 -3.7 364,775 + SGL_RS03605 0.61 -1.5 364,775 + SGL_RS03605 0.61 -4.2 364,775 + SGL_RS03605 0.61 -2.9 364,775 + SGL_RS03605 0.61 -2.4 364,783 - SGL_RS03605 0.63 -3.1 364,783 - SGL_RS03605 0.63 -5.9 364,855 + SGL_RS03605 0.75 -4.4 364,863 - SGL_RS03605 0.77 -3.6 364,870 + SGL_RS03605 0.78 -3.9 364,876 + SGL_RS03605 0.79 -4.0 365,214 - SGL_RS03610 0.66 +0.9
Or see this region's nucleotide sequence