Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03595

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03590 and SGL_RS03595 overlap by 4 nucleotidesSGL_RS03595 and SGL_RS03600 are separated by 69 nucleotides SGL_RS03590: SGL_RS03590 - ATP-grasp domain-containing protein, at 361,163 to 362,188 _RS03590 SGL_RS03595: SGL_RS03595 - NAD-dependent epimerase/dehydratase family protein, at 362,185 to 363,420 _RS03595 SGL_RS03600: SGL_RS03600 - class I SAM-dependent methyltransferase, at 363,490 to 364,218 _RS03600 Position (kb) 362 363 364Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 361.603 kb on + strand, within SGL_RS03590at 361.847 kb on + strand, within SGL_RS03590at 361.889 kb on - strand, within SGL_RS03590at 361.948 kb on + strand, within SGL_RS03590at 362.055 kb on - strand, within SGL_RS03590at 362.244 kb on - strandat 362.386 kb on - strand, within SGL_RS03595at 362.794 kb on - strand, within SGL_RS03595at 363.552 kb on - strandat 364.062 kb on - strand, within SGL_RS03600at 364.102 kb on + strand, within SGL_RS03600at 364.350 kb on - strandat 364.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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361,603 + SGL_RS03590 0.43 -4.2
361,847 + SGL_RS03590 0.67 -3.8
361,889 - SGL_RS03590 0.71 -3.4
361,948 + SGL_RS03590 0.77 -2.9
362,055 - SGL_RS03590 0.87 -5.4
362,244 - -2.8
362,386 - SGL_RS03595 0.16 -0.5
362,794 - SGL_RS03595 0.49 -0.6
363,552 - -4.6
364,062 - SGL_RS03600 0.78 -1.2
364,102 + SGL_RS03600 0.84 +0.1
364,350 - -3.7
364,385 - -4.5

Or see this region's nucleotide sequence