Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02620 and SGL_RS02625 are separated by 29 nucleotides SGL_RS02625 and SGL_RS02630 are separated by 125 nucleotides SGL_RS02630 and SGL_RS02635 are separated by 373 nucleotides
SGL_RS02620: SGL_RS02620 - RDD family protein, at 160,258 to 161,058
_RS02620
SGL_RS02625: SGL_RS02625 - peroxiredoxin, at 161,088 to 161,642
_RS02625
SGL_RS02630: SGL_RS02630 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 161,768 to 163,663
_RS02630
SGL_RS02635: SGL_RS02635 - diflavin flavoprotein, at 164,037 to 165,821
_RS02635
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 160.829 kb on + strand, within SGL_RS02620 at 160.842 kb on + strand, within SGL_RS02620 at 160.850 kb on - strand, within SGL_RS02620 at 160.898 kb on - strand, within SGL_RS02620 at 160.899 kb on - strand, within SGL_RS02620 at 161.138 kb on - strand at 161.241 kb on - strand, within SGL_RS02625 at 161.250 kb on + strand, within SGL_RS02625 at 161.316 kb on + strand, within SGL_RS02625 at 161.546 kb on + strand, within SGL_RS02625 at 163.764 kb on + strand at 163.779 kb on - strand at 163.786 kb on - strand at 163.791 kb on + strand at 163.897 kb on + strand at 163.966 kb on + strand at 163.982 kb on + strand at 164.017 kb on + strand at 164.035 kb on + strand at 164.103 kb on + strand at 164.121 kb on + strand at 164.262 kb on + strand, within SGL_RS02635 at 164.282 kb on + strand, within SGL_RS02635 at 164.380 kb on + strand, within SGL_RS02635 at 164.426 kb on - strand, within SGL_RS02635 at 164.521 kb on - strand, within SGL_RS02635 at 164.600 kb on + strand, within SGL_RS02635 at 164.608 kb on - strand, within SGL_RS02635 at 164.642 kb on + strand, within SGL_RS02635 at 164.642 kb on + strand, within SGL_RS02635
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 160,829 + SGL_RS02620 0.71 +0.9 160,842 + SGL_RS02620 0.73 +0.4 160,850 - SGL_RS02620 0.74 +0.8 160,898 - SGL_RS02620 0.80 -0.6 160,899 - SGL_RS02620 0.80 +0.1 161,138 - +2.9 161,241 - SGL_RS02625 0.28 -0.4 161,250 + SGL_RS02625 0.29 -1.9 161,316 + SGL_RS02625 0.41 -0.7 161,546 + SGL_RS02625 0.83 -0.2 163,764 + -1.2 163,779 - +0.0 163,786 - -0.4 163,791 + -0.7 163,897 + +0.2 163,966 + -1.5 163,982 + +0.4 164,017 + -1.5 164,035 + -1.1 164,103 + -0.5 164,121 + -1.1 164,262 + SGL_RS02635 0.13 -1.1 164,282 + SGL_RS02635 0.14 -0.8 164,380 + SGL_RS02635 0.19 -0.3 164,426 - SGL_RS02635 0.22 +0.3 164,521 - SGL_RS02635 0.27 -2.1 164,600 + SGL_RS02635 0.32 -1.0 164,608 - SGL_RS02635 0.32 +0.2 164,642 + SGL_RS02635 0.34 -0.3 164,642 + SGL_RS02635 0.34 -1.8
Or see this region's nucleotide sequence