Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02265 and SGL_RS02270 are separated by 230 nucleotides SGL_RS02270 and SGL_RS02275 are separated by 105 nucleotides
SGL_RS02265: SGL_RS02265 - transglutaminase family protein, at 88,818 to 90,506
_RS02265
SGL_RS02270: SGL_RS02270 - hypothetical protein, at 90,737 to 91,411
_RS02270
SGL_RS02275: SGL_RS02275 - SPFH domain-containing protein, at 91,517 to 92,482
_RS02275
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 89.758 kb on - strand, within SGL_RS02265 at 89.760 kb on - strand, within SGL_RS02265 at 89.793 kb on + strand, within SGL_RS02265 at 89.796 kb on - strand, within SGL_RS02265 at 89.800 kb on - strand, within SGL_RS02265 at 89.861 kb on - strand, within SGL_RS02265 at 89.861 kb on - strand, within SGL_RS02265 at 89.955 kb on - strand, within SGL_RS02265 at 90.013 kb on - strand, within SGL_RS02265 at 90.013 kb on - strand, within SGL_RS02265 at 90.115 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.144 kb on + strand, within SGL_RS02265 at 90.248 kb on - strand, within SGL_RS02265 at 90.262 kb on - strand, within SGL_RS02265 at 90.273 kb on - strand, within SGL_RS02265 at 90.275 kb on + strand, within SGL_RS02265 at 90.341 kb on - strand at 90.390 kb on + strand at 90.405 kb on - strand at 90.440 kb on - strand at 90.445 kb on - strand at 90.537 kb on + strand at 90.552 kb on - strand at 90.601 kb on + strand at 90.639 kb on - strand at 90.799 kb on + strand at 90.860 kb on + strand, within SGL_RS02270 at 90.895 kb on + strand, within SGL_RS02270 at 90.899 kb on - strand, within SGL_RS02270 at 90.920 kb on + strand, within SGL_RS02270 at 91.053 kb on - strand, within SGL_RS02270 at 91.055 kb on - strand, within SGL_RS02270 at 91.112 kb on + strand, within SGL_RS02270 at 91.137 kb on + strand, within SGL_RS02270 at 91.166 kb on - strand, within SGL_RS02270 at 91.224 kb on - strand, within SGL_RS02270 at 91.266 kb on + strand, within SGL_RS02270 at 91.266 kb on + strand, within SGL_RS02270 at 91.279 kb on - strand, within SGL_RS02270 at 91.293 kb on + strand, within SGL_RS02270 at 91.371 kb on - strand at 91.615 kb on + strand, within SGL_RS02275 at 91.646 kb on + strand, within SGL_RS02275 at 91.968 kb on - strand, within SGL_RS02275 at 91.998 kb on + strand, within SGL_RS02275 at 92.016 kb on - strand, within SGL_RS02275 at 92.069 kb on + strand, within SGL_RS02275 at 92.354 kb on + strand, within SGL_RS02275 at 92.408 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 89,758 - SGL_RS02265 0.56 +0.8 89,760 - SGL_RS02265 0.56 -0.4 89,793 + SGL_RS02265 0.58 +0.0 89,796 - SGL_RS02265 0.58 -3.1 89,800 - SGL_RS02265 0.58 -1.6 89,861 - SGL_RS02265 0.62 -0.2 89,861 - SGL_RS02265 0.62 -2.0 89,955 - SGL_RS02265 0.67 -1.3 90,013 - SGL_RS02265 0.71 -1.1 90,013 - SGL_RS02265 0.71 -0.5 90,115 + SGL_RS02265 0.77 -1.8 90,144 + SGL_RS02265 0.79 +0.3 90,144 + SGL_RS02265 0.79 -1.9 90,144 + SGL_RS02265 0.79 -1.3 90,144 + SGL_RS02265 0.79 -1.2 90,144 + SGL_RS02265 0.79 -0.6 90,144 + SGL_RS02265 0.79 +0.8 90,248 - SGL_RS02265 0.85 -0.9 90,262 - SGL_RS02265 0.85 -1.3 90,273 - SGL_RS02265 0.86 -2.5 90,275 + SGL_RS02265 0.86 -1.7 90,341 - -1.6 90,390 + -1.5 90,405 - -0.3 90,440 - -0.4 90,445 - +0.6 90,537 + -1.0 90,552 - +0.9 90,601 + +1.2 90,639 - +1.5 90,799 + +1.1 90,860 + SGL_RS02270 0.18 -0.4 90,895 + SGL_RS02270 0.23 +1.0 90,899 - SGL_RS02270 0.24 +1.5 90,920 + SGL_RS02270 0.27 +0.8 91,053 - SGL_RS02270 0.47 +0.5 91,055 - SGL_RS02270 0.47 +0.7 91,112 + SGL_RS02270 0.56 +0.2 91,137 + SGL_RS02270 0.59 +0.5 91,166 - SGL_RS02270 0.64 +0.4 91,224 - SGL_RS02270 0.72 +0.9 91,266 + SGL_RS02270 0.78 +1.1 91,266 + SGL_RS02270 0.78 +1.2 91,279 - SGL_RS02270 0.80 +0.6 91,293 + SGL_RS02270 0.82 +1.8 91,371 - +1.4 91,615 + SGL_RS02275 0.10 +1.1 91,646 + SGL_RS02275 0.13 +1.3 91,968 - SGL_RS02275 0.47 +1.3 91,998 + SGL_RS02275 0.50 +0.8 92,016 - SGL_RS02275 0.52 +1.3 92,069 + SGL_RS02275 0.57 +1.1 92,354 + SGL_RS02275 0.87 +1.8 92,408 + +0.8
Or see this region's nucleotide sequence