Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01560

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01555 and SGL_RS01560 are separated by 123 nucleotidesSGL_RS01560 and SGL_RS01565 are separated by 51 nucleotides SGL_RS01555: SGL_RS01555 - two-component system sensor histidine kinase RppB, at 36,066 to 37,418 _RS01555 SGL_RS01560: SGL_RS01560 - efflux RND transporter periplasmic adaptor subunit, at 37,542 to 39,119 _RS01560 SGL_RS01565: SGL_RS01565 - CusA/CzcA family heavy metal efflux RND transporter, at 39,171 to 42,311 _RS01565 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 37.285 kb on + strandat 37.292 kb on - strandat 37.292 kb on - strandat 37.292 kb on - strandat 37.292 kb on - strandat 37.292 kb on - strandat 37.320 kb on + strandat 37.330 kb on - strandat 37.333 kb on + strandat 37.339 kb on - strandat 37.341 kb on + strandat 37.386 kb on + strandat 37.505 kb on + strandat 37.508 kb on - strandat 37.513 kb on - strandat 37.520 kb on - strandat 37.531 kb on - strandat 37.532 kb on - strandat 37.557 kb on + strandat 37.565 kb on - strandat 37.565 kb on - strandat 37.572 kb on + strandat 37.622 kb on - strandat 37.622 kb on - strandat 37.622 kb on - strandat 37.627 kb on - strandat 37.687 kb on + strandat 37.800 kb on - strand, within SGL_RS01560at 37.804 kb on + strand, within SGL_RS01560at 37.838 kb on - strand, within SGL_RS01560at 37.856 kb on + strand, within SGL_RS01560at 37.862 kb on - strand, within SGL_RS01560at 37.877 kb on - strand, within SGL_RS01560at 37.910 kb on + strand, within SGL_RS01560at 37.918 kb on - strand, within SGL_RS01560at 37.970 kb on + strand, within SGL_RS01560at 37.978 kb on - strand, within SGL_RS01560at 38.020 kb on - strand, within SGL_RS01560at 38.088 kb on + strand, within SGL_RS01560at 38.096 kb on - strand, within SGL_RS01560at 38.128 kb on + strand, within SGL_RS01560at 38.176 kb on - strand, within SGL_RS01560at 38.178 kb on + strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.344 kb on - strand, within SGL_RS01560at 38.369 kb on - strand, within SGL_RS01560at 38.387 kb on + strand, within SGL_RS01560at 38.387 kb on + strand, within SGL_RS01560at 38.468 kb on + strand, within SGL_RS01560at 38.546 kb on - strand, within SGL_RS01560at 38.658 kb on + strand, within SGL_RS01560at 38.705 kb on - strand, within SGL_RS01560at 38.748 kb on - strand, within SGL_RS01560at 38.774 kb on - strand, within SGL_RS01560at 38.824 kb on + strand, within SGL_RS01560at 38.831 kb on + strand, within SGL_RS01560at 38.834 kb on - strand, within SGL_RS01560at 38.939 kb on + strand, within SGL_RS01560at 38.954 kb on - strand, within SGL_RS01560at 39.072 kb on - strandat 39.088 kb on + strandat 39.122 kb on + strandat 39.152 kb on - strandat 39.206 kb on + strandat 39.253 kb on + strandat 39.261 kb on - strandat 39.267 kb on + strandat 39.274 kb on + strandat 39.334 kb on + strandat 39.340 kb on - strandat 39.342 kb on - strandat 39.498 kb on - strand, within SGL_RS01565at 39.509 kb on + strand, within SGL_RS01565at 39.517 kb on - strand, within SGL_RS01565at 39.522 kb on - strand, within SGL_RS01565at 39.609 kb on - strand, within SGL_RS01565at 39.714 kb on + strand, within SGL_RS01565at 39.741 kb on - strand, within SGL_RS01565at 39.767 kb on - strand, within SGL_RS01565at 39.769 kb on + strand, within SGL_RS01565at 39.770 kb on + strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 40.002 kb on + strand, within SGL_RS01565at 40.010 kb on - strand, within SGL_RS01565at 40.055 kb on + strand, within SGL_RS01565at 40.062 kb on + strand, within SGL_RS01565at 40.063 kb on - strand, within SGL_RS01565at 40.063 kb on - strand, within SGL_RS01565at 40.064 kb on - strand, within SGL_RS01565at 40.064 kb on - strand, within SGL_RS01565at 40.079 kb on + strand, within SGL_RS01565at 40.079 kb on + strand, within SGL_RS01565

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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37,285 + -0.2
37,292 - -1.3
37,292 - +0.2
37,292 - -0.2
37,292 - -1.4
37,292 - -0.7
37,320 + +0.5
37,330 - -1.9
37,333 + +0.1
37,339 - -0.5
37,341 + +0.0
37,386 + +0.3
37,505 + -4.9
37,508 - -4.5
37,513 - -4.2
37,520 - -5.2
37,531 - -7.7
37,532 - -5.8
37,557 + -4.2
37,565 - -3.1
37,565 - -5.4
37,572 + -3.9
37,622 - -3.0
37,622 - -6.3
37,622 - -0.5
37,627 - -2.4
37,687 + -5.5
37,800 - SGL_RS01560 0.16 -3.9
37,804 + SGL_RS01560 0.17 -2.5
37,838 - SGL_RS01560 0.19 -4.9
37,856 + SGL_RS01560 0.20 -4.4
37,862 - SGL_RS01560 0.20 -1.9
37,877 - SGL_RS01560 0.21 -5.4
37,910 + SGL_RS01560 0.23 -2.5
37,918 - SGL_RS01560 0.24 -4.6
37,970 + SGL_RS01560 0.27 -3.8
37,978 - SGL_RS01560 0.28 -5.0
38,020 - SGL_RS01560 0.30 -4.5
38,088 + SGL_RS01560 0.35 -0.8
38,096 - SGL_RS01560 0.35 -2.2
38,128 + SGL_RS01560 0.37 -3.8
38,176 - SGL_RS01560 0.40 -1.9
38,178 + SGL_RS01560 0.40 -5.5
38,186 - SGL_RS01560 0.41 -3.1
38,186 - SGL_RS01560 0.41 -1.5
38,186 - SGL_RS01560 0.41 -6.2
38,186 - SGL_RS01560 0.41 -4.6
38,186 - SGL_RS01560 0.41 -6.2
38,344 - SGL_RS01560 0.51 -4.2
38,369 - SGL_RS01560 0.52 -2.6
38,387 + SGL_RS01560 0.54 -2.9
38,387 + SGL_RS01560 0.54 -2.5
38,468 + SGL_RS01560 0.59 -4.7
38,546 - SGL_RS01560 0.64 -1.5
38,658 + SGL_RS01560 0.71 -1.9
38,705 - SGL_RS01560 0.74 -2.7
38,748 - SGL_RS01560 0.76 -5.0
38,774 - SGL_RS01560 0.78 -2.6
38,824 + SGL_RS01560 0.81 -4.2
38,831 + SGL_RS01560 0.82 -5.6
38,834 - SGL_RS01560 0.82 -3.2
38,939 + SGL_RS01560 0.89 -4.8
38,954 - SGL_RS01560 0.89 -5.4
39,072 - -4.1
39,088 + -2.4
39,122 + -4.8
39,152 - -3.4
39,206 + -1.8
39,253 + -3.0
39,261 - -2.2
39,267 + -2.2
39,274 + -2.8
39,334 + -3.4
39,340 - +0.9
39,342 - -5.5
39,498 - SGL_RS01565 0.10 -3.3
39,509 + SGL_RS01565 0.11 -3.9
39,517 - SGL_RS01565 0.11 -5.6
39,522 - SGL_RS01565 0.11 -4.0
39,609 - SGL_RS01565 0.14 -4.0
39,714 + SGL_RS01565 0.17 -4.6
39,741 - SGL_RS01565 0.18 -3.5
39,767 - SGL_RS01565 0.19 -4.1
39,769 + SGL_RS01565 0.19 -4.8
39,770 + SGL_RS01565 0.19 -7.0
39,998 - SGL_RS01565 0.26 -3.7
39,998 - SGL_RS01565 0.26 -4.5
39,998 - SGL_RS01565 0.26 -5.3
39,998 - SGL_RS01565 0.26 -2.3
40,002 + SGL_RS01565 0.26 -5.0
40,010 - SGL_RS01565 0.27 -5.4
40,055 + SGL_RS01565 0.28 -3.5
40,062 + SGL_RS01565 0.28 -4.5
40,063 - SGL_RS01565 0.28 -6.0
40,063 - SGL_RS01565 0.28 -1.6
40,064 - SGL_RS01565 0.28 -2.2
40,064 - SGL_RS01565 0.28 -4.8
40,079 + SGL_RS01565 0.29 -3.8
40,079 + SGL_RS01565 0.29 -1.0

Or see this region's nucleotide sequence