Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00915 and SGL_RS00920 are separated by 75 nucleotides SGL_RS00920 and SGL_RS00925 are separated by 8 nucleotides
SGL_RS00915: SGL_RS00915 - TIGR02221 family CRISPR-associated protein, at 51,537 to 52,805
_RS00915
SGL_RS00920: SGL_RS00920 - hypothetical protein, at 52,881 to 53,996
_RS00920
SGL_RS00925: SGL_RS00925 - TIGR03986 family CRISPR-associated RAMP protein, at 54,005 to 56,392
_RS00925
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1
2 at 51.974 kb on - strand, within SGL_RS00915 at 51.974 kb on - strand, within SGL_RS00915 at 51.978 kb on + strand, within SGL_RS00915 at 51.984 kb on - strand, within SGL_RS00915 at 52.042 kb on - strand, within SGL_RS00915 at 52.147 kb on + strand, within SGL_RS00915 at 52.150 kb on - strand, within SGL_RS00915 at 52.155 kb on + strand, within SGL_RS00915 at 52.165 kb on - strand, within SGL_RS00915 at 52.168 kb on + strand, within SGL_RS00915 at 52.243 kb on + strand, within SGL_RS00915 at 52.294 kb on + strand, within SGL_RS00915 at 52.347 kb on + strand, within SGL_RS00915 at 52.460 kb on + strand, within SGL_RS00915 at 52.460 kb on + strand, within SGL_RS00915 at 52.460 kb on + strand, within SGL_RS00915 at 52.467 kb on + strand, within SGL_RS00915 at 52.467 kb on + strand, within SGL_RS00915 at 52.468 kb on - strand, within SGL_RS00915 at 52.475 kb on - strand, within SGL_RS00915 at 52.521 kb on - strand, within SGL_RS00915 at 52.533 kb on - strand, within SGL_RS00915 at 52.629 kb on + strand, within SGL_RS00915 at 52.629 kb on + strand, within SGL_RS00915 at 52.788 kb on + strand at 52.985 kb on + strand at 52.985 kb on + strand at 53.024 kb on - strand, within SGL_RS00920 at 53.199 kb on - strand, within SGL_RS00920 at 53.467 kb on + strand, within SGL_RS00920 at 53.770 kb on + strand, within SGL_RS00920 at 54.121 kb on - strand at 54.411 kb on - strand, within SGL_RS00925 at 54.411 kb on - strand, within SGL_RS00925 at 54.522 kb on - strand, within SGL_RS00925 at 54.668 kb on - strand, within SGL_RS00925 at 54.792 kb on + strand, within SGL_RS00925
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 51,974 - SGL_RS00915 0.34 -0.0 51,974 - SGL_RS00915 0.34 +0.6 51,978 + SGL_RS00915 0.35 +0.5 51,984 - SGL_RS00915 0.35 +0.5 52,042 - SGL_RS00915 0.40 +0.2 52,147 + SGL_RS00915 0.48 -0.6 52,150 - SGL_RS00915 0.48 -1.1 52,155 + SGL_RS00915 0.49 -0.5 52,165 - SGL_RS00915 0.49 -1.0 52,168 + SGL_RS00915 0.50 -0.0 52,243 + SGL_RS00915 0.56 -1.0 52,294 + SGL_RS00915 0.60 +0.0 52,347 + SGL_RS00915 0.64 -0.2 52,460 + SGL_RS00915 0.73 -1.2 52,460 + SGL_RS00915 0.73 +0.9 52,460 + SGL_RS00915 0.73 -0.0 52,467 + SGL_RS00915 0.73 +0.5 52,467 + SGL_RS00915 0.73 -1.1 52,468 - SGL_RS00915 0.73 +1.1 52,475 - SGL_RS00915 0.74 +1.2 52,521 - SGL_RS00915 0.78 +0.5 52,533 - SGL_RS00915 0.78 +0.1 52,629 + SGL_RS00915 0.86 +0.3 52,629 + SGL_RS00915 0.86 -1.6 52,788 + +0.5 52,985 + -0.1 52,985 + +1.0 53,024 - SGL_RS00920 0.13 +0.3 53,199 - SGL_RS00920 0.28 -0.2 53,467 + SGL_RS00920 0.53 +0.4 53,770 + SGL_RS00920 0.80 +0.7 54,121 - +0.6 54,411 - SGL_RS00925 0.17 +0.3 54,411 - SGL_RS00925 0.17 +0.6 54,522 - SGL_RS00925 0.22 +1.0 54,668 - SGL_RS00925 0.28 +0.1 54,792 + SGL_RS00925 0.33 +2.0
Or see this region's nucleotide sequence