Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00810 and SGL_RS00815 overlap by 10 nucleotides SGL_RS00815 and SGL_RS00820 are separated by 65 nucleotides SGL_RS00820 and SGL_RS00825 are separated by 32 nucleotides SGL_RS00825 and SGL_RS00830 overlap by 8 nucleotides
SGL_RS00810: SGL_RS00810 - AbrB/MazE/SpoVT family DNA-binding domain-containing protein, at 36,597 to 36,848
_RS00810
SGL_RS00815: SGL_RS00815 - type II toxin-antitoxin system PemK/MazF family toxin, at 36,839 to 37,201
_RS00815
SGL_RS00820: SGL_RS00820 - DUF1819 family protein, at 37,267 to 37,521
_RS00820
SGL_RS00825: SGL_RS00825 - hypothetical protein, at 37,554 to 38,138
_RS00825
SGL_RS00830: SGL_RS00830 - hypothetical protein, at 38,131 to 38,712
_RS00830
Position (kb) 37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 36.582 kb on + strand at 36.653 kb on - strand, within SGL_RS00810 at 36.658 kb on - strand, within SGL_RS00810 at 36.801 kb on - strand, within SGL_RS00810 at 36.855 kb on - strand at 36.857 kb on - strand at 36.880 kb on - strand, within SGL_RS00815 at 37.136 kb on + strand, within SGL_RS00815 at 37.171 kb on - strand at 37.202 kb on + strand at 37.229 kb on - strand at 37.241 kb on - strand at 37.331 kb on - strand, within SGL_RS00820 at 37.344 kb on - strand, within SGL_RS00820 at 37.454 kb on + strand, within SGL_RS00820 at 37.472 kb on - strand, within SGL_RS00820 at 37.476 kb on + strand, within SGL_RS00820 at 37.476 kb on + strand, within SGL_RS00820 at 37.581 kb on + strand at 37.690 kb on + strand, within SGL_RS00825 at 37.722 kb on - strand, within SGL_RS00825 at 37.748 kb on + strand, within SGL_RS00825 at 37.751 kb on - strand, within SGL_RS00825 at 37.756 kb on - strand, within SGL_RS00825 at 37.785 kb on - strand, within SGL_RS00825 at 37.785 kb on - strand, within SGL_RS00825 at 37.925 kb on - strand, within SGL_RS00825 at 38.020 kb on - strand, within SGL_RS00825 at 38.218 kb on + strand, within SGL_RS00830 at 38.326 kb on + strand, within SGL_RS00830 at 38.341 kb on + strand, within SGL_RS00830 at 38.516 kb on + strand, within SGL_RS00830 at 38.581 kb on + strand, within SGL_RS00830 at 38.673 kb on + strand at 38.679 kb on - strand at 38.703 kb on - strand at 38.739 kb on + strand at 38.746 kb on + strand at 38.771 kb on + strand at 38.825 kb on + strand at 38.926 kb on - strand at 38.948 kb on + strand at 39.086 kb on + strand at 39.090 kb on + strand at 39.100 kb on + strand at 39.108 kb on - strand at 39.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 36,582 + -1.6 36,653 - SGL_RS00810 0.22 -0.3 36,658 - SGL_RS00810 0.24 -0.3 36,801 - SGL_RS00810 0.81 -0.3 36,855 - -1.3 36,857 - -1.2 36,880 - SGL_RS00815 0.11 -1.1 37,136 + SGL_RS00815 0.82 -0.7 37,171 - -0.2 37,202 + -0.7 37,229 - -1.1 37,241 - -0.4 37,331 - SGL_RS00820 0.25 -0.7 37,344 - SGL_RS00820 0.30 -1.4 37,454 + SGL_RS00820 0.73 -1.3 37,472 - SGL_RS00820 0.80 +0.2 37,476 + SGL_RS00820 0.82 -2.6 37,476 + SGL_RS00820 0.82 -0.9 37,581 + -2.4 37,690 + SGL_RS00825 0.23 -3.2 37,722 - SGL_RS00825 0.29 -2.5 37,748 + SGL_RS00825 0.33 -3.7 37,751 - SGL_RS00825 0.34 -0.2 37,756 - SGL_RS00825 0.35 -3.5 37,785 - SGL_RS00825 0.39 -1.4 37,785 - SGL_RS00825 0.39 -3.2 37,925 - SGL_RS00825 0.63 -4.0 38,020 - SGL_RS00825 0.80 -1.8 38,218 + SGL_RS00830 0.15 -3.7 38,326 + SGL_RS00830 0.34 -2.0 38,341 + SGL_RS00830 0.36 -0.2 38,516 + SGL_RS00830 0.66 -2.9 38,581 + SGL_RS00830 0.77 -1.2 38,673 + -1.4 38,679 - -1.8 38,703 - -3.3 38,739 + -2.1 38,746 + -2.7 38,771 + -1.2 38,825 + -0.0 38,926 - -1.8 38,948 + -0.9 39,086 + -1.5 39,090 + -1.7 39,100 + +0.3 39,108 - +0.1 39,137 + -1.2
Or see this region's nucleotide sequence