Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS20055 and SGL_RS00020 are separated by 827 nucleotides SGL_RS00020 and SGL_RS00025 are separated by 418 nucleotides SGL_RS00025 and SGL_RS00030 overlap by 61 nucleotides
SGL_RS00015: SGL_RS00015 - DUF5615 family PIN-like protein, at 1,136 to 1,540
_RS00015
SGL_RS20055: SGL_RS20055 - DUF433 domain-containing protein, at 1,515 to 1,700
_RS20055
SGL_RS00020: SGL_RS00020 - FG-GAP-like repeat-containing protein, at 2,528 to 13,921
_RS00020
SGL_RS00025: SGL_RS00025 - ATP-binding protein, at 14,340 to 14,639
_RS00025
SGL_RS00030: SGL_RS00030 - hypothetical protein, at 14,579 to 15,133
_RS00030
Position (kb) 2
3
4
5
6
7
8
9
10
11
12
13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1.854 kb on + strand at 1.905 kb on - strand at 2.585 kb on - strand at 2.585 kb on - strand at 2.632 kb on - strand at 2.632 kb on - strand at 2.652 kb on - strand at 2.748 kb on + strand at 2.763 kb on - strand at 2.813 kb on - strand at 2.820 kb on + strand at 2.825 kb on + strand at 2.825 kb on + strand at 2.835 kb on + strand at 2.860 kb on + strand at 2.906 kb on + strand at 2.916 kb on + strand at 2.916 kb on + strand at 2.924 kb on - strand at 2.924 kb on - strand at 2.985 kb on + strand at 3.105 kb on - strand at 3.215 kb on + strand at 3.218 kb on - strand at 3.257 kb on - strand at 3.281 kb on - strand at 3.437 kb on - strand at 3.505 kb on - strand at 3.550 kb on + strand at 3.680 kb on - strand, within SGL_RS00020 at 3.708 kb on + strand, within SGL_RS00020 at 4.039 kb on - strand, within SGL_RS00020 at 4.039 kb on - strand, within SGL_RS00020 at 4.101 kb on + strand, within SGL_RS00020 at 4.108 kb on + strand, within SGL_RS00020 at 4.235 kb on - strand, within SGL_RS00020 at 4.294 kb on - strand, within SGL_RS00020 at 4.300 kb on + strand, within SGL_RS00020 at 4.353 kb on + strand, within SGL_RS00020 at 4.402 kb on - strand, within SGL_RS00020 at 4.476 kb on + strand, within SGL_RS00020 at 4.495 kb on - strand, within SGL_RS00020 at 4.500 kb on - strand, within SGL_RS00020 at 4.503 kb on + strand, within SGL_RS00020 at 4.503 kb on + strand, within SGL_RS00020 at 4.532 kb on - strand, within SGL_RS00020 at 4.539 kb on + strand, within SGL_RS00020 at 4.549 kb on + strand, within SGL_RS00020 at 4.557 kb on - strand, within SGL_RS00020 at 4.557 kb on - strand, within SGL_RS00020 at 4.744 kb on + strand, within SGL_RS00020 at 4.835 kb on - strand, within SGL_RS00020 at 4.840 kb on - strand, within SGL_RS00020 at 4.863 kb on + strand, within SGL_RS00020 at 4.867 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.879 kb on + strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.887 kb on - strand, within SGL_RS00020 at 4.925 kb on + strand, within SGL_RS00020 at 4.964 kb on + strand, within SGL_RS00020 at 5.088 kb on + strand, within SGL_RS00020 at 5.088 kb on + strand, within SGL_RS00020 at 5.107 kb on + strand, within SGL_RS00020 at 5.144 kb on + strand, within SGL_RS00020 at 5.144 kb on + strand, within SGL_RS00020 at 5.159 kb on + strand, within SGL_RS00020 at 5.213 kb on + strand, within SGL_RS00020 at 5.238 kb on - strand, within SGL_RS00020 at 5.250 kb on + strand, within SGL_RS00020 at 5.322 kb on - strand, within SGL_RS00020 at 5.370 kb on + strand, within SGL_RS00020 at 5.404 kb on - strand, within SGL_RS00020 at 5.415 kb on - strand, within SGL_RS00020 at 5.445 kb on - strand, within SGL_RS00020 at 5.466 kb on + strand, within SGL_RS00020 at 5.557 kb on - strand, within SGL_RS00020 at 5.599 kb on + strand, within SGL_RS00020 at 5.658 kb on - strand, within SGL_RS00020 at 5.807 kb on - strand, within SGL_RS00020 at 5.930 kb on - strand, within SGL_RS00020 at 5.968 kb on + strand, within SGL_RS00020 at 5.976 kb on - strand, within SGL_RS00020 at 5.997 kb on + strand, within SGL_RS00020 at 6.067 kb on + strand, within SGL_RS00020 at 6.159 kb on + strand, within SGL_RS00020 at 6.290 kb on + strand, within SGL_RS00020 at 6.390 kb on - strand, within SGL_RS00020 at 6.419 kb on + strand, within SGL_RS00020 at 6.427 kb on + strand, within SGL_RS00020 at 6.453 kb on + strand, within SGL_RS00020 at 6.483 kb on + strand, within SGL_RS00020 at 6.612 kb on + strand, within SGL_RS00020 at 6.620 kb on - strand, within SGL_RS00020 at 6.665 kb on - strand, within SGL_RS00020 at 6.689 kb on - strand, within SGL_RS00020 at 6.761 kb on + strand, within SGL_RS00020 at 6.875 kb on - strand, within SGL_RS00020 at 6.902 kb on + strand, within SGL_RS00020 at 7.042 kb on - strand, within SGL_RS00020 at 7.044 kb on + strand, within SGL_RS00020 at 7.103 kb on - strand, within SGL_RS00020 at 7.151 kb on - strand, within SGL_RS00020 at 7.383 kb on - strand, within SGL_RS00020 at 7.383 kb on - strand, within SGL_RS00020 at 7.490 kb on - strand, within SGL_RS00020 at 7.494 kb on + strand, within SGL_RS00020 at 8.175 kb on - strand, within SGL_RS00020 at 8.395 kb on + strand, within SGL_RS00020 at 8.451 kb on - strand, within SGL_RS00020 at 8.580 kb on - strand, within SGL_RS00020 at 8.594 kb on - strand, within SGL_RS00020 at 8.632 kb on + strand, within SGL_RS00020 at 8.655 kb on + strand, within SGL_RS00020 at 8.722 kb on - strand, within SGL_RS00020 at 8.795 kb on + strand, within SGL_RS00020 at 8.816 kb on + strand, within SGL_RS00020 at 8.816 kb on + strand, within SGL_RS00020 at 8.825 kb on - strand, within SGL_RS00020 at 8.908 kb on - strand, within SGL_RS00020 at 9.004 kb on - strand, within SGL_RS00020 at 9.072 kb on + strand, within SGL_RS00020 at 9.072 kb on + strand, within SGL_RS00020 at 9.072 kb on + strand, within SGL_RS00020 at 9.122 kb on + strand, within SGL_RS00020 at 9.130 kb on - strand, within SGL_RS00020 at 9.130 kb on - strand, within SGL_RS00020 at 9.189 kb on - strand, within SGL_RS00020 at 9.246 kb on - strand, within SGL_RS00020 at 9.345 kb on + strand, within SGL_RS00020 at 9.359 kb on + strand, within SGL_RS00020 at 9.377 kb on + strand, within SGL_RS00020 at 9.382 kb on + strand, within SGL_RS00020 at 9.789 kb on + strand, within SGL_RS00020 at 9.789 kb on + strand, within SGL_RS00020 at 9.789 kb on + strand, within SGL_RS00020 at 9.797 kb on - strand, within SGL_RS00020 at 9.807 kb on - strand, within SGL_RS00020 at 10.182 kb on + strand, within SGL_RS00020 at 10.230 kb on - strand, within SGL_RS00020 at 10.279 kb on + strand, within SGL_RS00020 at 10.448 kb on - strand, within SGL_RS00020 at 10.821 kb on - strand, within SGL_RS00020 at 10.905 kb on - strand, within SGL_RS00020 at 10.948 kb on - strand, within SGL_RS00020 at 11.008 kb on - strand, within SGL_RS00020 at 11.068 kb on - strand, within SGL_RS00020 at 11.232 kb on - strand, within SGL_RS00020 at 11.244 kb on - strand, within SGL_RS00020 at 11.268 kb on - strand, within SGL_RS00020 at 11.346 kb on - strand, within SGL_RS00020 at 11.381 kb on + strand, within SGL_RS00020 at 11.438 kb on + strand, within SGL_RS00020 at 11.443 kb on + strand, within SGL_RS00020 at 11.448 kb on + strand, within SGL_RS00020 at 11.476 kb on + strand, within SGL_RS00020 at 11.573 kb on - strand, within SGL_RS00020 at 11.620 kb on + strand, within SGL_RS00020 at 11.639 kb on - strand, within SGL_RS00020 at 11.653 kb on - strand, within SGL_RS00020 at 11.769 kb on + strand, within SGL_RS00020 at 11.794 kb on - strand, within SGL_RS00020 at 11.824 kb on + strand, within SGL_RS00020 at 11.901 kb on - strand, within SGL_RS00020 at 12.094 kb on + strand, within SGL_RS00020 at 12.250 kb on - strand, within SGL_RS00020 at 12.308 kb on - strand, within SGL_RS00020 at 12.316 kb on + strand, within SGL_RS00020 at 12.364 kb on + strand, within SGL_RS00020 at 12.457 kb on - strand, within SGL_RS00020 at 12.571 kb on - strand, within SGL_RS00020 at 12.623 kb on + strand, within SGL_RS00020 at 12.631 kb on - strand, within SGL_RS00020 at 12.658 kb on - strand, within SGL_RS00020 at 12.671 kb on - strand, within SGL_RS00020 at 12.689 kb on - strand, within SGL_RS00020 at 12.760 kb on + strand, within SGL_RS00020 at 12.787 kb on + strand at 12.838 kb on - strand at 12.859 kb on + strand at 12.859 kb on + strand at 12.903 kb on + strand at 12.946 kb on - strand at 13.130 kb on - strand at 13.304 kb on - strand at 13.350 kb on + strand at 13.368 kb on - strand at 13.505 kb on - strand at 13.517 kb on - strand at 13.586 kb on + strand at 13.653 kb on - strand at 13.653 kb on - strand at 13.663 kb on - strand at 13.688 kb on + strand at 13.780 kb on + strand at 13.793 kb on - strand at 13.803 kb on - strand at 13.836 kb on - strand at 13.874 kb on + strand at 13.966 kb on - strand at 14.038 kb on + strand at 14.046 kb on - strand at 14.293 kb on + strand at 14.469 kb on + strand, within SGL_RS00025 at 14.488 kb on + strand, within SGL_RS00025 at 14.488 kb on + strand, within SGL_RS00025 at 14.488 kb on + strand, within SGL_RS00025 at 14.553 kb on + strand, within SGL_RS00025 at 14.576 kb on + strand, within SGL_RS00025 at 14.584 kb on - strand at 14.815 kb on - strand, within SGL_RS00030 at 14.868 kb on + strand, within SGL_RS00030
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,854 + +0.8 1,905 - +1.0 2,585 - +0.2 2,585 - -0.4 2,632 - -0.0 2,632 - +0.4 2,652 - +0.7 2,748 + +1.1 2,763 - +0.1 2,813 - +1.0 2,820 + +1.8 2,825 + +0.7 2,825 + +0.3 2,835 + -0.4 2,860 + -0.6 2,906 + +0.3 2,916 + -0.2 2,916 + +0.1 2,924 - -0.1 2,924 - +0.0 2,985 + +0.7 3,105 - -0.6 3,215 + +1.1 3,218 - -0.7 3,257 - +0.3 3,281 - -1.0 3,437 - +0.3 3,505 - +1.9 3,550 + -0.1 3,680 - SGL_RS00020 0.10 +0.4 3,708 + SGL_RS00020 0.10 +0.6 4,039 - SGL_RS00020 0.13 -0.7 4,039 - SGL_RS00020 0.13 +0.7 4,101 + SGL_RS00020 0.14 -1.3 4,108 + SGL_RS00020 0.14 +1.0 4,235 - SGL_RS00020 0.15 +0.2 4,294 - SGL_RS00020 0.15 +0.2 4,300 + SGL_RS00020 0.16 -1.4 4,353 + SGL_RS00020 0.16 +0.1 4,402 - SGL_RS00020 0.16 -1.0 4,476 + SGL_RS00020 0.17 +1.3 4,495 - SGL_RS00020 0.17 +0.1 4,500 - SGL_RS00020 0.17 -2.7 4,503 + SGL_RS00020 0.17 -0.4 4,503 + SGL_RS00020 0.17 -1.2 4,532 - SGL_RS00020 0.18 +0.3 4,539 + SGL_RS00020 0.18 +0.2 4,549 + SGL_RS00020 0.18 -0.6 4,557 - SGL_RS00020 0.18 +0.3 4,557 - SGL_RS00020 0.18 -0.6 4,744 + SGL_RS00020 0.19 +0.9 4,835 - SGL_RS00020 0.20 +0.6 4,840 - SGL_RS00020 0.20 -0.3 4,863 + SGL_RS00020 0.20 -1.1 4,867 + SGL_RS00020 0.21 -1.1 4,879 + SGL_RS00020 0.21 -0.6 4,879 + SGL_RS00020 0.21 -0.6 4,879 + SGL_RS00020 0.21 +0.3 4,879 + SGL_RS00020 0.21 -0.1 4,879 + SGL_RS00020 0.21 +0.2 4,879 + SGL_RS00020 0.21 -0.3 4,879 + SGL_RS00020 0.21 -0.9 4,887 - SGL_RS00020 0.21 +0.0 4,887 - SGL_RS00020 0.21 -0.6 4,887 - SGL_RS00020 0.21 -0.8 4,887 - SGL_RS00020 0.21 +0.6 4,887 - SGL_RS00020 0.21 -0.7 4,887 - SGL_RS00020 0.21 -0.2 4,887 - SGL_RS00020 0.21 -1.4 4,925 + SGL_RS00020 0.21 +0.1 4,964 + SGL_RS00020 0.21 -2.1 5,088 + SGL_RS00020 0.22 -0.2 5,088 + SGL_RS00020 0.22 -0.1 5,107 + SGL_RS00020 0.23 +0.3 5,144 + SGL_RS00020 0.23 +0.6 5,144 + SGL_RS00020 0.23 -0.3 5,159 + SGL_RS00020 0.23 -0.2 5,213 + SGL_RS00020 0.24 +1.2 5,238 - SGL_RS00020 0.24 +0.3 5,250 + SGL_RS00020 0.24 -0.1 5,322 - SGL_RS00020 0.25 -0.1 5,370 + SGL_RS00020 0.25 -1.1 5,404 - SGL_RS00020 0.25 -0.9 5,415 - SGL_RS00020 0.25 -1.0 5,445 - SGL_RS00020 0.26 +0.6 5,466 + SGL_RS00020 0.26 -0.7 5,557 - SGL_RS00020 0.27 +0.4 5,599 + SGL_RS00020 0.27 +0.1 5,658 - SGL_RS00020 0.27 -0.7 5,807 - SGL_RS00020 0.29 -0.9 5,930 - SGL_RS00020 0.30 -0.2 5,968 + SGL_RS00020 0.30 +0.1 5,976 - SGL_RS00020 0.30 -0.2 5,997 + SGL_RS00020 0.30 -0.2 6,067 + SGL_RS00020 0.31 -0.7 6,159 + SGL_RS00020 0.32 +1.0 6,290 + SGL_RS00020 0.33 -1.7 6,390 - SGL_RS00020 0.34 -0.1 6,419 + SGL_RS00020 0.34 -0.6 6,427 + SGL_RS00020 0.34 +0.1 6,453 + SGL_RS00020 0.34 -0.1 6,483 + SGL_RS00020 0.35 +2.3 6,612 + SGL_RS00020 0.36 +2.5 6,620 - SGL_RS00020 0.36 +0.1 6,665 - SGL_RS00020 0.36 +0.6 6,689 - SGL_RS00020 0.37 -0.5 6,761 + SGL_RS00020 0.37 +0.4 6,875 - SGL_RS00020 0.38 -0.5 6,902 + SGL_RS00020 0.38 -0.8 7,042 - SGL_RS00020 0.40 +2.1 7,044 + SGL_RS00020 0.40 -0.7 7,103 - SGL_RS00020 0.40 +0.3 7,151 - SGL_RS00020 0.41 -1.4 7,383 - SGL_RS00020 0.43 -0.1 7,383 - SGL_RS00020 0.43 -0.8 7,490 - SGL_RS00020 0.44 +0.3 7,494 + SGL_RS00020 0.44 +0.6 8,175 - SGL_RS00020 0.50 -0.1 8,395 + SGL_RS00020 0.51 +0.6 8,451 - SGL_RS00020 0.52 -1.4 8,580 - SGL_RS00020 0.53 -2.1 8,594 - SGL_RS00020 0.53 +0.8 8,632 + SGL_RS00020 0.54 -0.4 8,655 + SGL_RS00020 0.54 -0.0 8,722 - SGL_RS00020 0.54 +0.2 8,795 + SGL_RS00020 0.55 -0.7 8,816 + SGL_RS00020 0.55 -0.3 8,816 + SGL_RS00020 0.55 -0.4 8,825 - SGL_RS00020 0.55 +0.3 8,908 - SGL_RS00020 0.56 -0.7 9,004 - SGL_RS00020 0.57 +0.2 9,072 + SGL_RS00020 0.57 -0.1 9,072 + SGL_RS00020 0.57 -0.2 9,072 + SGL_RS00020 0.57 -0.8 9,122 + SGL_RS00020 0.58 -0.5 9,130 - SGL_RS00020 0.58 +0.6 9,130 - SGL_RS00020 0.58 -0.5 9,189 - SGL_RS00020 0.58 -1.0 9,246 - SGL_RS00020 0.59 -0.1 9,345 + SGL_RS00020 0.60 -0.4 9,359 + SGL_RS00020 0.60 +0.1 9,377 + SGL_RS00020 0.60 -1.4 9,382 + SGL_RS00020 0.60 -1.2 9,789 + SGL_RS00020 0.64 +1.1 9,789 + SGL_RS00020 0.64 +0.6 9,789 + SGL_RS00020 0.64 -0.8 9,797 - SGL_RS00020 0.64 +0.9 9,807 - SGL_RS00020 0.64 +0.2 10,182 + SGL_RS00020 0.67 +0.2 10,230 - SGL_RS00020 0.68 +0.2 10,279 + SGL_RS00020 0.68 -0.9 10,448 - SGL_RS00020 0.70 +0.8 10,821 - SGL_RS00020 0.73 +0.4 10,905 - SGL_RS00020 0.74 +0.1 10,948 - SGL_RS00020 0.74 +0.4 11,008 - SGL_RS00020 0.74 +0.2 11,068 - SGL_RS00020 0.75 +0.5 11,232 - SGL_RS00020 0.76 +1.1 11,244 - SGL_RS00020 0.76 -0.5 11,268 - SGL_RS00020 0.77 +0.7 11,346 - SGL_RS00020 0.77 -0.0 11,381 + SGL_RS00020 0.78 -1.9 11,438 + SGL_RS00020 0.78 -0.2 11,443 + SGL_RS00020 0.78 +0.9 11,448 + SGL_RS00020 0.78 -0.4 11,476 + SGL_RS00020 0.79 +0.4 11,573 - SGL_RS00020 0.79 +0.9 11,620 + SGL_RS00020 0.80 -1.7 11,639 - SGL_RS00020 0.80 -1.2 11,653 - SGL_RS00020 0.80 +0.2 11,769 + SGL_RS00020 0.81 +0.1 11,794 - SGL_RS00020 0.81 +0.4 11,824 + SGL_RS00020 0.82 -0.8 11,901 - SGL_RS00020 0.82 +0.7 12,094 + SGL_RS00020 0.84 -0.9 12,250 - SGL_RS00020 0.85 -1.2 12,308 - SGL_RS00020 0.86 -0.6 12,316 + SGL_RS00020 0.86 -0.3 12,364 + SGL_RS00020 0.86 -0.2 12,457 - SGL_RS00020 0.87 +0.4 12,571 - SGL_RS00020 0.88 +0.7 12,623 + SGL_RS00020 0.89 +0.1 12,631 - SGL_RS00020 0.89 +0.1 12,658 - SGL_RS00020 0.89 -0.3 12,671 - SGL_RS00020 0.89 -0.2 12,689 - SGL_RS00020 0.89 +0.3 12,760 + SGL_RS00020 0.90 -0.4 12,787 + -1.1 12,838 - +0.2 12,859 + +0.8 12,859 + -0.4 12,903 + -1.9 12,946 - -0.8 13,130 - -0.2 13,304 - -1.3 13,350 + -0.2 13,368 - +0.6 13,505 - +1.6 13,517 - -0.9 13,586 + +1.2 13,653 - +0.2 13,653 - -0.0 13,663 - -1.9 13,688 + +0.4 13,780 + -0.4 13,793 - -0.2 13,803 - -1.6 13,836 - -0.7 13,874 + -0.8 13,966 - +0.0 14,038 + -0.3 14,046 - +1.0 14,293 + +0.3 14,469 + SGL_RS00025 0.43 -2.0 14,488 + SGL_RS00025 0.49 -0.9 14,488 + SGL_RS00025 0.49 -0.6 14,488 + SGL_RS00025 0.49 -0.0 14,553 + SGL_RS00025 0.71 -2.0 14,576 + SGL_RS00025 0.79 -0.8 14,584 - +1.9 14,815 - SGL_RS00030 0.43 -0.3 14,868 + SGL_RS00030 0.52 -1.2
Or see this region's nucleotide sequence