Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12210 and SGL_RS20075 are separated by 103 nucleotides SGL_RS20075 and SGL_RS12225 are separated by 401 nucleotides
SGL_RS12210: SGL_RS12210 - type IV pilus twitching motility protein PilT, at 2,202,944 to 2,204,053
_RS12210
SGL_RS20075: SGL_RS20075 - type II secretion system F family protein, at 2,204,157 to 2,205,372
_RS20075
SGL_RS12225: SGL_RS12225 - ATP-dependent Clp protease proteolytic subunit, at 2,205,774 to 2,206,451
_RS12225
Position (kb)
2204
2205
2206 Strain fitness (log2 ratio)
-1
0
1
2 at 2203.200 kb on + strand, within SGL_RS12210 at 2203.296 kb on - strand, within SGL_RS12210 at 2203.410 kb on - strand, within SGL_RS12210 at 2203.602 kb on - strand, within SGL_RS12210 at 2203.637 kb on + strand, within SGL_RS12210 at 2203.708 kb on + strand, within SGL_RS12210 at 2203.711 kb on - strand, within SGL_RS12210 at 2203.716 kb on - strand, within SGL_RS12210 at 2203.731 kb on + strand, within SGL_RS12210 at 2203.914 kb on + strand, within SGL_RS12210 at 2203.919 kb on + strand, within SGL_RS12210 at 2204.158 kb on + strand at 2204.235 kb on - strand at 2204.250 kb on - strand at 2204.484 kb on + strand, within SGL_RS20075 at 2204.492 kb on - strand, within SGL_RS20075 at 2204.494 kb on + strand, within SGL_RS20075 at 2204.672 kb on - strand, within SGL_RS20075 at 2205.176 kb on - strand, within SGL_RS20075 at 2205.450 kb on + strand at 2205.532 kb on + strand at 2205.635 kb on + strand at 2205.656 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,203,200 + SGL_RS12210 0.23 +0.5 2,203,296 - SGL_RS12210 0.32 +0.6 2,203,410 - SGL_RS12210 0.42 +1.4 2,203,602 - SGL_RS12210 0.59 +1.1 2,203,637 + SGL_RS12210 0.62 +1.0 2,203,708 + SGL_RS12210 0.69 +1.4 2,203,711 - SGL_RS12210 0.69 +1.1 2,203,716 - SGL_RS12210 0.70 +1.0 2,203,731 + SGL_RS12210 0.71 +0.4 2,203,914 + SGL_RS12210 0.87 +2.7 2,203,919 + SGL_RS12210 0.88 +1.2 2,204,158 + +2.6 2,204,235 - +2.6 2,204,250 - +2.4 2,204,484 + SGL_RS20075 0.27 +2.3 2,204,492 - SGL_RS20075 0.28 +2.5 2,204,494 + SGL_RS20075 0.28 +2.3 2,204,672 - SGL_RS20075 0.42 +2.6 2,205,176 - SGL_RS20075 0.84 +2.6 2,205,450 + -0.3 2,205,532 + -0.8 2,205,635 + -0.1 2,205,656 - +0.8
Or see this region's nucleotide sequence