Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18270

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18260 and SGL_RS18270 are separated by 298 nucleotidesSGL_RS18270 and SGL_RS18275 are separated by 149 nucleotides SGL_RS18260: SGL_RS18260 - cyclic 2,3-diphosphoglycerate synthase, at 3,545,120 to 3,546,493 _RS18260 SGL_RS18270: SGL_RS18270 - family 10 glycosylhydrolase, at 3,546,792 to 3,548,315 _RS18270 SGL_RS18275: SGL_RS18275 - cyclic nucleotide-binding domain-containing protein, at 3,548,465 to 3,549,706 _RS18275 Position (kb) 3546 3547 3548 3549Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3545.925 kb on - strand, within SGL_RS18260at 3545.944 kb on - strand, within SGL_RS18260at 3546.001 kb on - strand, within SGL_RS18260at 3546.029 kb on + strand, within SGL_RS18260at 3546.198 kb on + strand, within SGL_RS18260at 3546.232 kb on + strand, within SGL_RS18260at 3546.297 kb on - strand, within SGL_RS18260at 3546.504 kb on - strandat 3546.519 kb on - strandat 3546.536 kb on + strandat 3546.544 kb on - strandat 3547.048 kb on + strand, within SGL_RS18270at 3548.080 kb on - strand, within SGL_RS18270at 3548.108 kb on + strand, within SGL_RS18270at 3548.118 kb on + strand, within SGL_RS18270at 3548.133 kb on + strand, within SGL_RS18270at 3548.504 kb on - strandat 3548.868 kb on + strand, within SGL_RS18275at 3548.871 kb on - strand, within SGL_RS18275at 3548.911 kb on + strand, within SGL_RS18275at 3548.920 kb on + strand, within SGL_RS18275at 3549.220 kb on + strand, within SGL_RS18275at 3549.289 kb on - strand, within SGL_RS18275

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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3,545,925 - SGL_RS18260 0.59 -0.9
3,545,944 - SGL_RS18260 0.60 -0.4
3,546,001 - SGL_RS18260 0.64 -0.3
3,546,029 + SGL_RS18260 0.66 +0.2
3,546,198 + SGL_RS18260 0.78 +0.1
3,546,232 + SGL_RS18260 0.81 +1.9
3,546,297 - SGL_RS18260 0.86 -0.6
3,546,504 - +0.9
3,546,519 - +0.3
3,546,536 + -0.2
3,546,544 - -0.2
3,547,048 + SGL_RS18270 0.17 -2.1
3,548,080 - SGL_RS18270 0.85 -3.6
3,548,108 + SGL_RS18270 0.86 -4.7
3,548,118 + SGL_RS18270 0.87 -5.5
3,548,133 + SGL_RS18270 0.88 -3.5
3,548,504 - -0.4
3,548,868 + SGL_RS18275 0.32 +0.2
3,548,871 - SGL_RS18275 0.33 +0.7
3,548,911 + SGL_RS18275 0.36 +0.3
3,548,920 + SGL_RS18275 0.37 -0.5
3,549,220 + SGL_RS18275 0.61 -0.3
3,549,289 - SGL_RS18275 0.66 -1.0

Or see this region's nucleotide sequence