Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17720 and SGL_RS17725 are separated by 21 nucleotides SGL_RS17725 and SGL_RS17730 overlap by 1 nucleotides SGL_RS17730 and SGL_RS17735 are separated by 62 nucleotides SGL_RS17735 and SGL_RS17740 are separated by 113 nucleotides
SGL_RS17720: SGL_RS17720 - NYN domain-containing protein, at 3,428,383 to 3,428,940
_RS17720
SGL_RS17725: SGL_RS17725 - type II toxin-antitoxin system HicB family antitoxin, at 3,428,962 to 3,429,171
_RS17725
SGL_RS17730: SGL_RS17730 - type II toxin-antitoxin system HicA family toxin, at 3,429,171 to 3,429,398
_RS17730
SGL_RS17735: SGL_RS17735 - hypothetical protein, at 3,429,461 to 3,431,203
_RS17735
SGL_RS17740: SGL_RS17740 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 3,431,317 to 3,432,972
_RS17740
Position (kb)
3429
3430
3431
3432 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3428.894 kb on - strand at 3429.203 kb on + strand, within SGL_RS17730 at 3429.973 kb on + strand, within SGL_RS17735 at 3430.278 kb on - strand, within SGL_RS17735 at 3430.279 kb on + strand, within SGL_RS17735 at 3430.279 kb on + strand, within SGL_RS17735 at 3430.346 kb on + strand, within SGL_RS17735 at 3430.440 kb on - strand, within SGL_RS17735 at 3430.506 kb on - strand, within SGL_RS17735 at 3430.543 kb on - strand, within SGL_RS17735 at 3431.041 kb on + strand at 3431.114 kb on + strand at 3431.123 kb on - strand at 3431.220 kb on + strand at 3431.228 kb on - strand at 3431.271 kb on - strand at 3431.310 kb on + strand at 3431.320 kb on + strand at 3431.350 kb on - strand at 3431.463 kb on + strand at 3431.715 kb on - strand, within SGL_RS17740 at 3431.724 kb on + strand, within SGL_RS17740 at 3432.003 kb on - strand, within SGL_RS17740 at 3432.015 kb on + strand, within SGL_RS17740 at 3432.018 kb on - strand, within SGL_RS17740 at 3432.054 kb on + strand, within SGL_RS17740
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 3,428,894 - -1.0 3,429,203 + SGL_RS17730 0.14 +0.3 3,429,973 + SGL_RS17735 0.29 -3.6 3,430,278 - SGL_RS17735 0.47 -5.0 3,430,279 + SGL_RS17735 0.47 -3.2 3,430,279 + SGL_RS17735 0.47 -4.2 3,430,346 + SGL_RS17735 0.51 -5.3 3,430,440 - SGL_RS17735 0.56 -5.7 3,430,506 - SGL_RS17735 0.60 -4.3 3,430,543 - SGL_RS17735 0.62 -5.2 3,431,041 + -3.0 3,431,114 + -3.3 3,431,123 - -4.6 3,431,220 + -0.2 3,431,228 - +0.0 3,431,271 - +0.0 3,431,310 + -2.0 3,431,320 + -3.8 3,431,350 - -2.7 3,431,463 + -4.4 3,431,715 - SGL_RS17740 0.24 -6.2 3,431,724 + SGL_RS17740 0.25 -5.3 3,432,003 - SGL_RS17740 0.41 -5.6 3,432,015 + SGL_RS17740 0.42 -2.6 3,432,018 - SGL_RS17740 0.42 -5.8 3,432,054 + SGL_RS17740 0.45 -5.0
Or see this region's nucleotide sequence