Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17735

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17720 and SGL_RS17725 are separated by 21 nucleotidesSGL_RS17725 and SGL_RS17730 overlap by 1 nucleotidesSGL_RS17730 and SGL_RS17735 are separated by 62 nucleotidesSGL_RS17735 and SGL_RS17740 are separated by 113 nucleotides SGL_RS17720: SGL_RS17720 - NYN domain-containing protein, at 3,428,383 to 3,428,940 _RS17720 SGL_RS17725: SGL_RS17725 - type II toxin-antitoxin system HicB family antitoxin, at 3,428,962 to 3,429,171 _RS17725 SGL_RS17730: SGL_RS17730 - type II toxin-antitoxin system HicA family toxin, at 3,429,171 to 3,429,398 _RS17730 SGL_RS17735: SGL_RS17735 - hypothetical protein, at 3,429,461 to 3,431,203 _RS17735 SGL_RS17740: SGL_RS17740 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 3,431,317 to 3,432,972 _RS17740 Position (kb) 3429 3430 3431 3432Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3428.894 kb on - strandat 3429.203 kb on + strand, within SGL_RS17730at 3429.973 kb on + strand, within SGL_RS17735at 3430.278 kb on - strand, within SGL_RS17735at 3430.279 kb on + strand, within SGL_RS17735at 3430.279 kb on + strand, within SGL_RS17735at 3430.346 kb on + strand, within SGL_RS17735at 3430.440 kb on - strand, within SGL_RS17735at 3430.506 kb on - strand, within SGL_RS17735at 3430.543 kb on - strand, within SGL_RS17735at 3431.041 kb on + strandat 3431.114 kb on + strandat 3431.123 kb on - strandat 3431.220 kb on + strandat 3431.228 kb on - strandat 3431.271 kb on - strandat 3431.310 kb on + strandat 3431.320 kb on + strandat 3431.350 kb on - strandat 3431.463 kb on + strandat 3431.715 kb on - strand, within SGL_RS17740at 3431.724 kb on + strand, within SGL_RS17740at 3432.003 kb on - strand, within SGL_RS17740at 3432.015 kb on + strand, within SGL_RS17740at 3432.018 kb on - strand, within SGL_RS17740at 3432.054 kb on + strand, within SGL_RS17740

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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3,428,894 - -1.0
3,429,203 + SGL_RS17730 0.14 +0.3
3,429,973 + SGL_RS17735 0.29 -3.6
3,430,278 - SGL_RS17735 0.47 -5.0
3,430,279 + SGL_RS17735 0.47 -3.2
3,430,279 + SGL_RS17735 0.47 -4.2
3,430,346 + SGL_RS17735 0.51 -5.3
3,430,440 - SGL_RS17735 0.56 -5.7
3,430,506 - SGL_RS17735 0.60 -4.3
3,430,543 - SGL_RS17735 0.62 -5.2
3,431,041 + -3.0
3,431,114 + -3.3
3,431,123 - -4.6
3,431,220 + -0.2
3,431,228 - +0.0
3,431,271 - +0.0
3,431,310 + -2.0
3,431,320 + -3.8
3,431,350 - -2.7
3,431,463 + -4.4
3,431,715 - SGL_RS17740 0.24 -6.2
3,431,724 + SGL_RS17740 0.25 -5.3
3,432,003 - SGL_RS17740 0.41 -5.6
3,432,015 + SGL_RS17740 0.42 -2.6
3,432,018 - SGL_RS17740 0.42 -5.8
3,432,054 + SGL_RS17740 0.45 -5.0

Or see this region's nucleotide sequence