Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16850 and SGL_RS16855 are separated by 242 nucleotides SGL_RS16855 and SGL_RS16860 are separated by 65 nucleotides SGL_RS16860 and SGL_RS16865 are separated by 18 nucleotides SGL_RS16865 and SGL_RS16870 overlap by 4 nucleotides
SGL_RS16850: SGL_RS16850 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 3,233,816 to 3,235,186
_RS16850
SGL_RS16855: SGL_RS16855 - DUF4327 family protein, at 3,235,429 to 3,235,680
_RS16855
SGL_RS16860: SGL_RS16860 - small ribosomal subunit biogenesis GTPase RsgA, at 3,235,746 to 3,236,855
_RS16860
SGL_RS16865: SGL_RS16865 - sulfurtransferase TusA family protein, at 3,236,874 to 3,237,128
_RS16865
SGL_RS16870: SGL_RS16870 - molecular chaperone DnaJ, at 3,237,125 to 3,238,258
_RS16870
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3235.295 kb on + strand at 3235.399 kb on + strand at 3235.409 kb on + strand at 3235.491 kb on + strand, within SGL_RS16855 at 3235.519 kb on + strand, within SGL_RS16855 at 3235.522 kb on - strand, within SGL_RS16855 at 3235.524 kb on - strand, within SGL_RS16855 at 3235.587 kb on + strand, within SGL_RS16855 at 3235.647 kb on + strand, within SGL_RS16855 at 3235.989 kb on + strand, within SGL_RS16860 at 3235.997 kb on + strand, within SGL_RS16860 at 3235.997 kb on + strand, within SGL_RS16860 at 3236.005 kb on - strand, within SGL_RS16860 at 3236.005 kb on - strand, within SGL_RS16860 at 3236.282 kb on + strand, within SGL_RS16860 at 3236.297 kb on + strand, within SGL_RS16860 at 3236.324 kb on - strand, within SGL_RS16860 at 3236.382 kb on + strand, within SGL_RS16860 at 3236.568 kb on - strand, within SGL_RS16860 at 3236.651 kb on + strand, within SGL_RS16860 at 3236.656 kb on + strand, within SGL_RS16860 at 3236.857 kb on + strand at 3236.857 kb on + strand at 3236.922 kb on + strand, within SGL_RS16865 at 3236.956 kb on - strand, within SGL_RS16865 at 3237.134 kb on + strand at 3237.330 kb on + strand, within SGL_RS16870
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 3,235,295 + +0.0 3,235,399 + -0.0 3,235,409 + +0.2 3,235,491 + SGL_RS16855 0.25 -0.9 3,235,519 + SGL_RS16855 0.36 -1.2 3,235,522 - SGL_RS16855 0.37 -3.9 3,235,524 - SGL_RS16855 0.38 -0.4 3,235,587 + SGL_RS16855 0.63 +0.6 3,235,647 + SGL_RS16855 0.87 -0.9 3,235,989 + SGL_RS16860 0.22 -3.8 3,235,997 + SGL_RS16860 0.23 -6.6 3,235,997 + SGL_RS16860 0.23 -3.9 3,236,005 - SGL_RS16860 0.23 -4.1 3,236,005 - SGL_RS16860 0.23 -4.8 3,236,282 + SGL_RS16860 0.48 -5.7 3,236,297 + SGL_RS16860 0.50 -3.8 3,236,324 - SGL_RS16860 0.52 -4.0 3,236,382 + SGL_RS16860 0.57 -3.7 3,236,568 - SGL_RS16860 0.74 -2.1 3,236,651 + SGL_RS16860 0.82 -2.6 3,236,656 + SGL_RS16860 0.82 -4.6 3,236,857 + +0.2 3,236,857 + +0.2 3,236,922 + SGL_RS16865 0.19 -0.5 3,236,956 - SGL_RS16865 0.32 +0.3 3,237,134 + -0.2 3,237,330 + SGL_RS16870 0.18 -1.8
Or see this region's nucleotide sequence