Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15425

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15420 and SGL_RS15425 are separated by 130 nucleotidesSGL_RS15425 and SGL_RS15430 are separated by 62 nucleotides SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859 _RS15420 SGL_RS15425: SGL_RS15425 - cobalamin biosynthesis protein CobW, at 2,911,990 to 2,913,048 _RS15425 SGL_RS15430: SGL_RS15430 - Ycf66 family protein, at 2,913,111 to 2,914,124 _RS15430 Position (kb) 2911 2912 2913 2914Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2911.146 kb on - strandat 2911.504 kb on + strand, within SGL_RS15420at 2911.623 kb on + strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420at 2911.631 kb on - strand, within SGL_RS15420at 2911.902 kb on - strandat 2912.025 kb on + strandat 2912.092 kb on + strandat 2912.133 kb on - strand, within SGL_RS15425at 2912.240 kb on - strand, within SGL_RS15425at 2912.240 kb on - strand, within SGL_RS15425at 2912.334 kb on + strand, within SGL_RS15425at 2912.337 kb on - strand, within SGL_RS15425at 2912.622 kb on - strand, within SGL_RS15425at 2912.779 kb on + strand, within SGL_RS15425at 2912.842 kb on + strand, within SGL_RS15425at 2912.865 kb on + strand, within SGL_RS15425at 2912.910 kb on + strand, within SGL_RS15425at 2912.919 kb on - strand, within SGL_RS15425at 2912.926 kb on - strand, within SGL_RS15425at 2912.960 kb on - strandat 2912.962 kb on + strandat 2913.042 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,911,146 - +0.1
2,911,504 + SGL_RS15420 0.52 -1.6
2,911,623 + SGL_RS15420 0.68 -0.6
2,911,631 - SGL_RS15420 0.69 -0.4
2,911,631 - SGL_RS15420 0.69 +0.3
2,911,902 - +0.1
2,912,025 + -5.2
2,912,092 + -2.4
2,912,133 - SGL_RS15425 0.14 -4.6
2,912,240 - SGL_RS15425 0.24 -4.8
2,912,240 - SGL_RS15425 0.24 -4.0
2,912,334 + SGL_RS15425 0.32 -3.8
2,912,337 - SGL_RS15425 0.33 -5.1
2,912,622 - SGL_RS15425 0.60 -4.8
2,912,779 + SGL_RS15425 0.75 -4.6
2,912,842 + SGL_RS15425 0.80 -3.1
2,912,865 + SGL_RS15425 0.83 -3.5
2,912,910 + SGL_RS15425 0.87 -4.4
2,912,919 - SGL_RS15425 0.88 -3.3
2,912,926 - SGL_RS15425 0.88 -2.5
2,912,960 - -2.8
2,912,962 + -3.2
2,913,042 + -1.3

Or see this region's nucleotide sequence