Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15060

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15045 and SGL_RS15050 are separated by 129 nucleotidesSGL_RS15050 and SGL_RS15055 overlap by 25 nucleotidesSGL_RS15055 and SGL_RS15060 are separated by 6 nucleotidesSGL_RS15060 and SGL_RS15065 are separated by 112 nucleotides SGL_RS15045: SGL_RS15045 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,823,646 to 2,824,893 _RS15045 SGL_RS15050: SGL_RS15050 - MliC family protein, at 2,825,023 to 2,825,355 _RS15050 SGL_RS15055: SGL_RS15055 - hypothetical protein, at 2,825,331 to 2,825,711 _RS15055 SGL_RS15060: SGL_RS15060 - PstS family phosphate ABC transporter substrate-binding protein, at 2,825,718 to 2,826,641 _RS15060 SGL_RS15065: SGL_RS15065 - DUF4105 domain-containing protein, at 2,826,754 to 2,827,947 _RS15065 Position (kb) 2825 2826 2827Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2824.724 kb on - strand, within SGL_RS15045at 2824.731 kb on - strand, within SGL_RS15045at 2824.785 kb on + strandat 2824.824 kb on - strandat 2824.925 kb on - strandat 2824.935 kb on + strandat 2825.224 kb on + strand, within SGL_RS15050at 2825.231 kb on - strand, within SGL_RS15050at 2825.287 kb on - strand, within SGL_RS15050at 2825.495 kb on + strand, within SGL_RS15055at 2825.522 kb on + strand, within SGL_RS15055at 2825.537 kb on - strand, within SGL_RS15055at 2825.728 kb on + strandat 2825.798 kb on - strandat 2825.863 kb on - strand, within SGL_RS15060at 2826.005 kb on + strand, within SGL_RS15060at 2826.006 kb on + strand, within SGL_RS15060at 2826.036 kb on + strand, within SGL_RS15060at 2826.090 kb on - strand, within SGL_RS15060at 2826.161 kb on - strand, within SGL_RS15060at 2826.173 kb on + strand, within SGL_RS15060at 2826.188 kb on + strand, within SGL_RS15060at 2826.231 kb on + strand, within SGL_RS15060at 2826.268 kb on + strand, within SGL_RS15060at 2826.394 kb on - strand, within SGL_RS15060at 2826.401 kb on + strand, within SGL_RS15060at 2826.520 kb on + strand, within SGL_RS15060at 2826.657 kb on + strandat 2826.658 kb on - strandat 2826.873 kb on + strandat 2827.355 kb on - strand, within SGL_RS15065at 2827.429 kb on + strand, within SGL_RS15065at 2827.529 kb on - strand, within SGL_RS15065at 2827.544 kb on + strand, within SGL_RS15065at 2827.544 kb on + strand, within SGL_RS15065at 2827.544 kb on + strand, within SGL_RS15065at 2827.552 kb on - strand, within SGL_RS15065

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,824,724 - SGL_RS15045 0.86 -4.8
2,824,731 - SGL_RS15045 0.87 -3.0
2,824,785 + -4.2
2,824,824 - -2.2
2,824,925 - +0.8
2,824,935 + -0.3
2,825,224 + SGL_RS15050 0.60 -0.8
2,825,231 - SGL_RS15050 0.62 +0.5
2,825,287 - SGL_RS15050 0.79 -1.3
2,825,495 + SGL_RS15055 0.43 -0.3
2,825,522 + SGL_RS15055 0.50 -0.5
2,825,537 - SGL_RS15055 0.54 +0.5
2,825,728 + +0.2
2,825,798 - -0.8
2,825,863 - SGL_RS15060 0.16 -2.8
2,826,005 + SGL_RS15060 0.31 -3.5
2,826,006 + SGL_RS15060 0.31 -4.4
2,826,036 + SGL_RS15060 0.34 -4.2
2,826,090 - SGL_RS15060 0.40 -5.4
2,826,161 - SGL_RS15060 0.48 -7.0
2,826,173 + SGL_RS15060 0.49 -5.5
2,826,188 + SGL_RS15060 0.51 -5.1
2,826,231 + SGL_RS15060 0.56 -4.8
2,826,268 + SGL_RS15060 0.60 -2.1
2,826,394 - SGL_RS15060 0.73 -4.8
2,826,401 + SGL_RS15060 0.74 -6.0
2,826,520 + SGL_RS15060 0.87 -3.7
2,826,657 + -0.2
2,826,658 - -0.0
2,826,873 + -0.3
2,827,355 - SGL_RS15065 0.50 +0.6
2,827,429 + SGL_RS15065 0.57 +0.7
2,827,529 - SGL_RS15065 0.65 +0.7
2,827,544 + SGL_RS15065 0.66 -0.3
2,827,544 + SGL_RS15065 0.66 +0.7
2,827,544 + SGL_RS15065 0.66 -0.2
2,827,552 - SGL_RS15065 0.67 +0.4

Or see this region's nucleotide sequence