Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15045

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15040 and SGL_RS15045 are separated by 110 nucleotidesSGL_RS15045 and SGL_RS15050 are separated by 129 nucleotidesSGL_RS15050 and SGL_RS15055 overlap by 25 nucleotidesSGL_RS15055 and SGL_RS15060 are separated by 6 nucleotides SGL_RS15040: SGL_RS15040 - acyl-CoA desaturase, at 2,822,579 to 2,823,535 _RS15040 SGL_RS15045: SGL_RS15045 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,823,646 to 2,824,893 _RS15045 SGL_RS15050: SGL_RS15050 - MliC family protein, at 2,825,023 to 2,825,355 _RS15050 SGL_RS15055: SGL_RS15055 - hypothetical protein, at 2,825,331 to 2,825,711 _RS15055 SGL_RS15060: SGL_RS15060 - PstS family phosphate ABC transporter substrate-binding protein, at 2,825,718 to 2,826,641 _RS15060 Position (kb) 2823 2824 2825Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2823.780 kb on - strand, within SGL_RS15045at 2823.789 kb on + strand, within SGL_RS15045at 2823.797 kb on + strand, within SGL_RS15045at 2823.857 kb on - strand, within SGL_RS15045at 2823.857 kb on - strand, within SGL_RS15045at 2823.904 kb on + strand, within SGL_RS15045at 2823.916 kb on + strand, within SGL_RS15045at 2823.970 kb on + strand, within SGL_RS15045at 2823.970 kb on + strand, within SGL_RS15045at 2823.970 kb on + strand, within SGL_RS15045at 2823.978 kb on - strand, within SGL_RS15045at 2823.978 kb on - strand, within SGL_RS15045at 2824.046 kb on - strand, within SGL_RS15045at 2824.090 kb on + strand, within SGL_RS15045at 2824.165 kb on + strand, within SGL_RS15045at 2824.358 kb on - strand, within SGL_RS15045at 2824.384 kb on - strand, within SGL_RS15045at 2824.513 kb on - strand, within SGL_RS15045at 2824.649 kb on - strand, within SGL_RS15045at 2824.724 kb on - strand, within SGL_RS15045at 2824.731 kb on - strand, within SGL_RS15045at 2824.785 kb on + strandat 2824.824 kb on - strandat 2824.925 kb on - strandat 2824.935 kb on + strandat 2825.224 kb on + strand, within SGL_RS15050at 2825.231 kb on - strand, within SGL_RS15050at 2825.287 kb on - strand, within SGL_RS15050at 2825.495 kb on + strand, within SGL_RS15055at 2825.522 kb on + strand, within SGL_RS15055at 2825.537 kb on - strand, within SGL_RS15055at 2825.728 kb on + strandat 2825.798 kb on - strandat 2825.863 kb on - strand, within SGL_RS15060

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,823,780 - SGL_RS15045 0.11 -4.2
2,823,789 + SGL_RS15045 0.11 -2.4
2,823,797 + SGL_RS15045 0.12 -4.9
2,823,857 - SGL_RS15045 0.17 -0.3
2,823,857 - SGL_RS15045 0.17 -4.4
2,823,904 + SGL_RS15045 0.21 -3.8
2,823,916 + SGL_RS15045 0.22 -5.2
2,823,970 + SGL_RS15045 0.26 -4.9
2,823,970 + SGL_RS15045 0.26 -0.8
2,823,970 + SGL_RS15045 0.26 -2.4
2,823,978 - SGL_RS15045 0.27 -3.6
2,823,978 - SGL_RS15045 0.27 -1.6
2,824,046 - SGL_RS15045 0.32 -1.9
2,824,090 + SGL_RS15045 0.36 -2.3
2,824,165 + SGL_RS15045 0.42 -1.8
2,824,358 - SGL_RS15045 0.57 -3.4
2,824,384 - SGL_RS15045 0.59 -1.6
2,824,513 - SGL_RS15045 0.69 -4.7
2,824,649 - SGL_RS15045 0.80 -4.6
2,824,724 - SGL_RS15045 0.86 -4.8
2,824,731 - SGL_RS15045 0.87 -3.0
2,824,785 + -4.2
2,824,824 - -2.2
2,824,925 - +0.8
2,824,935 + -0.3
2,825,224 + SGL_RS15050 0.60 -0.8
2,825,231 - SGL_RS15050 0.62 +0.5
2,825,287 - SGL_RS15050 0.79 -1.3
2,825,495 + SGL_RS15055 0.43 -0.3
2,825,522 + SGL_RS15055 0.50 -0.5
2,825,537 - SGL_RS15055 0.54 +0.5
2,825,728 + +0.2
2,825,798 - -0.8
2,825,863 - SGL_RS15060 0.16 -2.8

Or see this region's nucleotide sequence