Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14965 and SGL_RS14970 are separated by 34 nucleotides SGL_RS14970 and SGL_RS14975 are separated by 94 nucleotides SGL_RS14975 and SGL_RS14980 are separated by 193 nucleotides SGL_RS14980 and SGL_RS14985 are separated by 59 nucleotides
SGL_RS14965: SGL_RS14965 - DUF2779 domain-containing protein, at 2,810,115 to 2,811,593
_RS14965
SGL_RS14970: SGL_RS14970 - hypothetical protein, at 2,811,628 to 2,812,290
_RS14970
SGL_RS14975: SGL_RS14975 - translation initiation factor, at 2,812,385 to 2,812,720
_RS14975
SGL_RS14980: SGL_RS14980 - phosphatase PAP2 family protein, at 2,812,914 to 2,813,594
_RS14980
SGL_RS14985: SGL_RS14985 - DNA polymerase III subunit delta, at 2,813,654 to 2,814,655
_RS14985
Position (kb)
2812
2813 Strain fitness (log2 ratio)
-2
-1
0
1 at 2811.436 kb on - strand, within SGL_RS14965 at 2811.466 kb on - strand at 2811.647 kb on + strand at 2811.648 kb on + strand at 2811.826 kb on + strand, within SGL_RS14970 at 2811.902 kb on + strand, within SGL_RS14970 at 2811.968 kb on + strand, within SGL_RS14970 at 2811.976 kb on - strand, within SGL_RS14970 at 2812.062 kb on + strand, within SGL_RS14970 at 2812.186 kb on + strand, within SGL_RS14970 at 2812.240 kb on - strand at 2812.506 kb on - strand, within SGL_RS14975 at 2812.632 kb on - strand, within SGL_RS14975 at 2812.650 kb on + strand, within SGL_RS14975 at 2812.715 kb on + strand at 2812.723 kb on - strand at 2812.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,811,436 - SGL_RS14965 0.89 -0.3 2,811,466 - -0.5 2,811,647 + -0.2 2,811,648 + +0.2 2,811,826 + SGL_RS14970 0.30 -1.8 2,811,902 + SGL_RS14970 0.41 +0.8 2,811,968 + SGL_RS14970 0.51 +0.0 2,811,976 - SGL_RS14970 0.52 +0.4 2,812,062 + SGL_RS14970 0.65 -0.5 2,812,186 + SGL_RS14970 0.84 -0.5 2,812,240 - +0.5 2,812,506 - SGL_RS14975 0.36 +0.4 2,812,632 - SGL_RS14975 0.74 +1.2 2,812,650 + SGL_RS14975 0.79 +1.3 2,812,715 + +1.1 2,812,723 - +0.2 2,812,723 - +0.6
Or see this region's nucleotide sequence