Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14975

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14965 and SGL_RS14970 are separated by 34 nucleotidesSGL_RS14970 and SGL_RS14975 are separated by 94 nucleotidesSGL_RS14975 and SGL_RS14980 are separated by 193 nucleotidesSGL_RS14980 and SGL_RS14985 are separated by 59 nucleotides SGL_RS14965: SGL_RS14965 - DUF2779 domain-containing protein, at 2,810,115 to 2,811,593 _RS14965 SGL_RS14970: SGL_RS14970 - hypothetical protein, at 2,811,628 to 2,812,290 _RS14970 SGL_RS14975: SGL_RS14975 - translation initiation factor, at 2,812,385 to 2,812,720 _RS14975 SGL_RS14980: SGL_RS14980 - phosphatase PAP2 family protein, at 2,812,914 to 2,813,594 _RS14980 SGL_RS14985: SGL_RS14985 - DNA polymerase III subunit delta, at 2,813,654 to 2,814,655 _RS14985 Position (kb) 2812 2813Strain fitness (log2 ratio) -2 -1 0 1at 2811.436 kb on - strand, within SGL_RS14965at 2811.466 kb on - strandat 2811.647 kb on + strandat 2811.648 kb on + strandat 2811.826 kb on + strand, within SGL_RS14970at 2811.902 kb on + strand, within SGL_RS14970at 2811.968 kb on + strand, within SGL_RS14970at 2811.976 kb on - strand, within SGL_RS14970at 2812.062 kb on + strand, within SGL_RS14970at 2812.186 kb on + strand, within SGL_RS14970at 2812.240 kb on - strandat 2812.506 kb on - strand, within SGL_RS14975at 2812.632 kb on - strand, within SGL_RS14975at 2812.650 kb on + strand, within SGL_RS14975at 2812.715 kb on + strandat 2812.723 kb on - strandat 2812.723 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,811,436 - SGL_RS14965 0.89 -0.3
2,811,466 - -0.5
2,811,647 + -0.2
2,811,648 + +0.2
2,811,826 + SGL_RS14970 0.30 -1.8
2,811,902 + SGL_RS14970 0.41 +0.8
2,811,968 + SGL_RS14970 0.51 +0.0
2,811,976 - SGL_RS14970 0.52 +0.4
2,812,062 + SGL_RS14970 0.65 -0.5
2,812,186 + SGL_RS14970 0.84 -0.5
2,812,240 - +0.5
2,812,506 - SGL_RS14975 0.36 +0.4
2,812,632 - SGL_RS14975 0.74 +1.2
2,812,650 + SGL_RS14975 0.79 +1.3
2,812,715 + +1.1
2,812,723 - +0.2
2,812,723 - +0.6

Or see this region's nucleotide sequence