Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14835

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14830 and SGL_RS14835 are separated by 106 nucleotidesSGL_RS14835 and SGL_RS14840 are separated by 85 nucleotidesSGL_RS14840 and SGL_RS14845 are separated by 80 nucleotides SGL_RS14830: SGL_RS14830 - FkbM family methyltransferase, at 2,781,403 to 2,784,447 _RS14830 SGL_RS14835: SGL_RS14835 - FkbM family methyltransferase, at 2,784,554 to 2,785,855 _RS14835 SGL_RS14840: SGL_RS14840 - class I SAM-dependent methyltransferase, at 2,785,941 to 2,786,717 _RS14840 SGL_RS14845: SGL_RS14845 - hypothetical protein, at 2,786,798 to 2,788,417 _RS14845 Position (kb) 2784 2785 2786Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2783.604 kb on - strand, within SGL_RS14830at 2783.818 kb on - strand, within SGL_RS14830at 2783.874 kb on + strand, within SGL_RS14830at 2783.877 kb on - strand, within SGL_RS14830at 2784.044 kb on + strand, within SGL_RS14830at 2784.067 kb on - strand, within SGL_RS14830at 2784.082 kb on - strand, within SGL_RS14830at 2784.600 kb on - strandat 2784.718 kb on + strand, within SGL_RS14835at 2784.838 kb on + strand, within SGL_RS14835at 2784.919 kb on - strand, within SGL_RS14835at 2784.941 kb on + strand, within SGL_RS14835at 2785.193 kb on + strand, within SGL_RS14835at 2785.437 kb on + strand, within SGL_RS14835at 2785.450 kb on + strand, within SGL_RS14835at 2785.477 kb on + strand, within SGL_RS14835at 2785.544 kb on + strand, within SGL_RS14835at 2785.608 kb on + strand, within SGL_RS14835at 2785.633 kb on - strand, within SGL_RS14835at 2785.701 kb on + strand, within SGL_RS14835at 2785.943 kb on - strandat 2785.963 kb on + strandat 2786.140 kb on + strand, within SGL_RS14840at 2786.281 kb on + strand, within SGL_RS14840at 2786.339 kb on - strand, within SGL_RS14840at 2786.529 kb on + strand, within SGL_RS14840at 2786.620 kb on - strand, within SGL_RS14840

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,783,604 - SGL_RS14830 0.72 -6.3
2,783,818 - SGL_RS14830 0.79 -2.7
2,783,874 + SGL_RS14830 0.81 -5.2
2,783,877 - SGL_RS14830 0.81 -3.8
2,784,044 + SGL_RS14830 0.87 -2.7
2,784,067 - SGL_RS14830 0.87 -3.0
2,784,082 - SGL_RS14830 0.88 -1.7
2,784,600 - -5.8
2,784,718 + SGL_RS14835 0.13 -4.5
2,784,838 + SGL_RS14835 0.22 -3.3
2,784,919 - SGL_RS14835 0.28 -4.3
2,784,941 + SGL_RS14835 0.30 -3.8
2,785,193 + SGL_RS14835 0.49 -4.1
2,785,437 + SGL_RS14835 0.68 -4.9
2,785,450 + SGL_RS14835 0.69 -3.3
2,785,477 + SGL_RS14835 0.71 -5.7
2,785,544 + SGL_RS14835 0.76 -4.1
2,785,608 + SGL_RS14835 0.81 -3.7
2,785,633 - SGL_RS14835 0.83 -3.0
2,785,701 + SGL_RS14835 0.88 -3.0
2,785,943 - -0.7
2,785,963 + -2.0
2,786,140 + SGL_RS14840 0.26 -0.4
2,786,281 + SGL_RS14840 0.44 -0.9
2,786,339 - SGL_RS14840 0.51 -1.0
2,786,529 + SGL_RS14840 0.76 -1.9
2,786,620 - SGL_RS14840 0.87 -0.4

Or see this region's nucleotide sequence