Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14565

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14560 and SGL_RS20165 are separated by 9 nucleotidesSGL_RS20165 and SGL_RS14565 are separated by 61 nucleotidesSGL_RS14565 and SGL_RS14570 are separated by 36 nucleotidesSGL_RS14570 and SGL_RS14575 are separated by 228 nucleotides SGL_RS14560: SGL_RS14560 - hypothetical protein, at 2,720,729 to 2,722,234 _RS14560 SGL_RS20165: SGL_RS20165 - hypothetical protein, at 2,722,244 to 2,722,369 _RS20165 SGL_RS14565: SGL_RS14565 - SpoIID/LytB domain-containing protein, at 2,722,431 to 2,724,038 _RS14565 SGL_RS14570: SGL_RS14570 - rhodanese-like domain-containing protein, at 2,724,075 to 2,724,419 _RS14570 SGL_RS14575: SGL_RS14575 - RNA-binding protein, at 2,724,648 to 2,725,103 _RS14575 Position (kb) 2722 2723 2724 2725Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2721.622 kb on + strand, within SGL_RS14560at 2722.014 kb on + strand, within SGL_RS14560at 2722.064 kb on + strand, within SGL_RS14560at 2722.072 kb on - strand, within SGL_RS14560at 2722.072 kb on - strand, within SGL_RS14560at 2722.185 kb on + strandat 2722.227 kb on + strandat 2722.270 kb on - strand, within SGL_RS20165at 2722.310 kb on - strand, within SGL_RS20165at 2722.316 kb on + strand, within SGL_RS20165at 2722.385 kb on - strandat 2722.470 kb on + strandat 2722.497 kb on + strandat 2722.505 kb on - strandat 2722.512 kb on - strandat 2722.529 kb on - strandat 2722.539 kb on - strandat 2722.633 kb on + strand, within SGL_RS14565at 2722.698 kb on - strand, within SGL_RS14565at 2722.787 kb on + strand, within SGL_RS14565at 2722.868 kb on - strand, within SGL_RS14565at 2722.873 kb on + strand, within SGL_RS14565at 2722.928 kb on - strand, within SGL_RS14565at 2723.003 kb on - strand, within SGL_RS14565at 2723.162 kb on - strand, within SGL_RS14565at 2723.201 kb on + strand, within SGL_RS14565at 2723.209 kb on - strand, within SGL_RS14565at 2723.211 kb on + strand, within SGL_RS14565at 2723.222 kb on + strand, within SGL_RS14565at 2723.230 kb on - strand, within SGL_RS14565at 2723.368 kb on - strand, within SGL_RS14565at 2723.369 kb on - strand, within SGL_RS14565at 2723.393 kb on + strand, within SGL_RS14565at 2723.401 kb on - strand, within SGL_RS14565at 2723.562 kb on - strand, within SGL_RS14565at 2723.574 kb on - strand, within SGL_RS14565at 2723.651 kb on + strand, within SGL_RS14565at 2723.794 kb on + strand, within SGL_RS14565at 2723.808 kb on + strand, within SGL_RS14565at 2723.923 kb on + strandat 2723.931 kb on - strandat 2724.139 kb on - strand, within SGL_RS14570at 2724.318 kb on + strand, within SGL_RS14570at 2724.318 kb on + strand, within SGL_RS14570at 2724.511 kb on + strandat 2724.771 kb on + strand, within SGL_RS14575

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,721,622 + SGL_RS14560 0.59 -2.7
2,722,014 + SGL_RS14560 0.85 -5.2
2,722,064 + SGL_RS14560 0.89 -4.8
2,722,072 - SGL_RS14560 0.89 -4.9
2,722,072 - SGL_RS14560 0.89 -5.6
2,722,185 + -5.7
2,722,227 + -2.9
2,722,270 - SGL_RS20165 0.21 -6.7
2,722,310 - SGL_RS20165 0.52 +0.7
2,722,316 + SGL_RS20165 0.57 -0.9
2,722,385 - +0.3
2,722,470 + -3.4
2,722,497 + -4.5
2,722,505 - -4.2
2,722,512 - -5.1
2,722,529 - -3.4
2,722,539 - -4.5
2,722,633 + SGL_RS14565 0.13 -3.2
2,722,698 - SGL_RS14565 0.17 -5.4
2,722,787 + SGL_RS14565 0.22 -3.8
2,722,868 - SGL_RS14565 0.27 -4.9
2,722,873 + SGL_RS14565 0.27 -3.4
2,722,928 - SGL_RS14565 0.31 -4.3
2,723,003 - SGL_RS14565 0.36 -0.8
2,723,162 - SGL_RS14565 0.45 -4.3
2,723,201 + SGL_RS14565 0.48 -5.3
2,723,209 - SGL_RS14565 0.48 -4.5
2,723,211 + SGL_RS14565 0.49 -4.8
2,723,222 + SGL_RS14565 0.49 -5.2
2,723,230 - SGL_RS14565 0.50 -3.3
2,723,368 - SGL_RS14565 0.58 -4.6
2,723,369 - SGL_RS14565 0.58 -3.9
2,723,393 + SGL_RS14565 0.60 -1.8
2,723,401 - SGL_RS14565 0.60 -3.1
2,723,562 - SGL_RS14565 0.70 -4.7
2,723,574 - SGL_RS14565 0.71 -5.1
2,723,651 + SGL_RS14565 0.76 -5.1
2,723,794 + SGL_RS14565 0.85 -1.8
2,723,808 + SGL_RS14565 0.86 -4.9
2,723,923 + -4.2
2,723,931 - -4.6
2,724,139 - SGL_RS14570 0.19 +0.2
2,724,318 + SGL_RS14570 0.70 +0.4
2,724,318 + SGL_RS14570 0.70 +1.0
2,724,511 + +3.1
2,724,771 + SGL_RS14575 0.27 +1.1

Or see this region's nucleotide sequence