Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14560 and SGL_RS20165 are separated by 9 nucleotides SGL_RS20165 and SGL_RS14565 are separated by 61 nucleotides SGL_RS14565 and SGL_RS14570 are separated by 36 nucleotides SGL_RS14570 and SGL_RS14575 are separated by 228 nucleotides
SGL_RS14560: SGL_RS14560 - hypothetical protein, at 2,720,729 to 2,722,234
_RS14560
SGL_RS20165: SGL_RS20165 - hypothetical protein, at 2,722,244 to 2,722,369
_RS20165
SGL_RS14565: SGL_RS14565 - SpoIID/LytB domain-containing protein, at 2,722,431 to 2,724,038
_RS14565
SGL_RS14570: SGL_RS14570 - rhodanese-like domain-containing protein, at 2,724,075 to 2,724,419
_RS14570
SGL_RS14575: SGL_RS14575 - RNA-binding protein, at 2,724,648 to 2,725,103
_RS14575
Position (kb)
2722
2723
2724
2725 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3 at 2721.622 kb on + strand, within SGL_RS14560 at 2722.014 kb on + strand, within SGL_RS14560 at 2722.064 kb on + strand, within SGL_RS14560 at 2722.072 kb on - strand, within SGL_RS14560 at 2722.072 kb on - strand, within SGL_RS14560 at 2722.185 kb on + strand at 2722.227 kb on + strand at 2722.270 kb on - strand, within SGL_RS20165 at 2722.310 kb on - strand, within SGL_RS20165 at 2722.316 kb on + strand, within SGL_RS20165 at 2722.385 kb on - strand at 2722.470 kb on + strand at 2722.497 kb on + strand at 2722.505 kb on - strand at 2722.512 kb on - strand at 2722.529 kb on - strand at 2722.539 kb on - strand at 2722.633 kb on + strand, within SGL_RS14565 at 2722.698 kb on - strand, within SGL_RS14565 at 2722.787 kb on + strand, within SGL_RS14565 at 2722.868 kb on - strand, within SGL_RS14565 at 2722.873 kb on + strand, within SGL_RS14565 at 2722.928 kb on - strand, within SGL_RS14565 at 2723.003 kb on - strand, within SGL_RS14565 at 2723.162 kb on - strand, within SGL_RS14565 at 2723.201 kb on + strand, within SGL_RS14565 at 2723.209 kb on - strand, within SGL_RS14565 at 2723.211 kb on + strand, within SGL_RS14565 at 2723.222 kb on + strand, within SGL_RS14565 at 2723.230 kb on - strand, within SGL_RS14565 at 2723.368 kb on - strand, within SGL_RS14565 at 2723.369 kb on - strand, within SGL_RS14565 at 2723.393 kb on + strand, within SGL_RS14565 at 2723.401 kb on - strand, within SGL_RS14565 at 2723.562 kb on - strand, within SGL_RS14565 at 2723.574 kb on - strand, within SGL_RS14565 at 2723.651 kb on + strand, within SGL_RS14565 at 2723.794 kb on + strand, within SGL_RS14565 at 2723.808 kb on + strand, within SGL_RS14565 at 2723.923 kb on + strand at 2723.931 kb on - strand at 2724.139 kb on - strand, within SGL_RS14570 at 2724.318 kb on + strand, within SGL_RS14570 at 2724.318 kb on + strand, within SGL_RS14570 at 2724.511 kb on + strand at 2724.771 kb on + strand, within SGL_RS14575
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,721,622 + SGL_RS14560 0.59 -2.7 2,722,014 + SGL_RS14560 0.85 -5.2 2,722,064 + SGL_RS14560 0.89 -4.8 2,722,072 - SGL_RS14560 0.89 -4.9 2,722,072 - SGL_RS14560 0.89 -5.6 2,722,185 + -5.7 2,722,227 + -2.9 2,722,270 - SGL_RS20165 0.21 -6.7 2,722,310 - SGL_RS20165 0.52 +0.7 2,722,316 + SGL_RS20165 0.57 -0.9 2,722,385 - +0.3 2,722,470 + -3.4 2,722,497 + -4.5 2,722,505 - -4.2 2,722,512 - -5.1 2,722,529 - -3.4 2,722,539 - -4.5 2,722,633 + SGL_RS14565 0.13 -3.2 2,722,698 - SGL_RS14565 0.17 -5.4 2,722,787 + SGL_RS14565 0.22 -3.8 2,722,868 - SGL_RS14565 0.27 -4.9 2,722,873 + SGL_RS14565 0.27 -3.4 2,722,928 - SGL_RS14565 0.31 -4.3 2,723,003 - SGL_RS14565 0.36 -0.8 2,723,162 - SGL_RS14565 0.45 -4.3 2,723,201 + SGL_RS14565 0.48 -5.3 2,723,209 - SGL_RS14565 0.48 -4.5 2,723,211 + SGL_RS14565 0.49 -4.8 2,723,222 + SGL_RS14565 0.49 -5.2 2,723,230 - SGL_RS14565 0.50 -3.3 2,723,368 - SGL_RS14565 0.58 -4.6 2,723,369 - SGL_RS14565 0.58 -3.9 2,723,393 + SGL_RS14565 0.60 -1.8 2,723,401 - SGL_RS14565 0.60 -3.1 2,723,562 - SGL_RS14565 0.70 -4.7 2,723,574 - SGL_RS14565 0.71 -5.1 2,723,651 + SGL_RS14565 0.76 -5.1 2,723,794 + SGL_RS14565 0.85 -1.8 2,723,808 + SGL_RS14565 0.86 -4.9 2,723,923 + -4.2 2,723,931 - -4.6 2,724,139 - SGL_RS14570 0.19 +0.2 2,724,318 + SGL_RS14570 0.70 +0.4 2,724,318 + SGL_RS14570 0.70 +1.0 2,724,511 + +3.1 2,724,771 + SGL_RS14575 0.27 +1.1
Or see this region's nucleotide sequence