Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14505

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14500 and SGL_RS14505 are separated by 77 nucleotidesSGL_RS14505 and SGL_RS14510 are separated by 125 nucleotidesSGL_RS14510 and SGL_RS14515 are separated by 135 nucleotides SGL_RS14500: SGL_RS14500 - urea ABC transporter ATP-binding subunit UrtE, at 2,708,257 to 2,709,006 _RS14500 SGL_RS14505: SGL_RS14505 - glutamate-5-semialdehyde dehydrogenase, at 2,709,084 to 2,710,385 _RS14505 SGL_RS14510: SGL_RS14510 - DUF3177 family protein, at 2,710,511 to 2,711,107 _RS14510 SGL_RS14515: SGL_RS14515 - type II toxin-antitoxin system HicA family toxin, at 2,711,243 to 2,711,422 _RS14515 Position (kb) 2709 2710 2711Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2708.231 kb on - strandat 2708.291 kb on - strandat 2708.513 kb on + strand, within SGL_RS14500at 2708.674 kb on + strand, within SGL_RS14500at 2708.740 kb on - strand, within SGL_RS14500at 2708.823 kb on - strand, within SGL_RS14500at 2708.924 kb on + strand, within SGL_RS14500at 2708.982 kb on - strandat 2709.119 kb on + strandat 2709.141 kb on - strandat 2709.164 kb on + strandat 2709.172 kb on - strandat 2709.388 kb on - strand, within SGL_RS14505at 2709.461 kb on - strand, within SGL_RS14505at 2709.540 kb on + strand, within SGL_RS14505at 2709.554 kb on - strand, within SGL_RS14505at 2709.649 kb on + strand, within SGL_RS14505at 2709.671 kb on - strand, within SGL_RS14505at 2709.745 kb on - strand, within SGL_RS14505at 2710.087 kb on - strand, within SGL_RS14505at 2710.178 kb on - strand, within SGL_RS14505at 2710.380 kb on + strandat 2710.439 kb on - strandat 2710.489 kb on + strandat 2710.497 kb on - strandat 2710.650 kb on + strand, within SGL_RS14510at 2710.652 kb on + strand, within SGL_RS14510at 2710.660 kb on - strand, within SGL_RS14510at 2710.722 kb on - strand, within SGL_RS14510at 2711.162 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,708,231 - -0.1
2,708,291 - -0.6
2,708,513 + SGL_RS14500 0.34 -1.4
2,708,674 + SGL_RS14500 0.56 +0.3
2,708,740 - SGL_RS14500 0.64 +0.8
2,708,823 - SGL_RS14500 0.75 -0.1
2,708,924 + SGL_RS14500 0.89 -1.0
2,708,982 - -0.3
2,709,119 + +1.8
2,709,141 - -3.1
2,709,164 + -3.8
2,709,172 - -4.1
2,709,388 - SGL_RS14505 0.23 -4.2
2,709,461 - SGL_RS14505 0.29 -3.4
2,709,540 + SGL_RS14505 0.35 -5.7
2,709,554 - SGL_RS14505 0.36 -4.3
2,709,649 + SGL_RS14505 0.43 -2.2
2,709,671 - SGL_RS14505 0.45 -3.4
2,709,745 - SGL_RS14505 0.51 -2.8
2,710,087 - SGL_RS14505 0.77 -2.0
2,710,178 - SGL_RS14505 0.84 -3.3
2,710,380 + +0.6
2,710,439 - -0.8
2,710,489 + +0.1
2,710,497 - -0.8
2,710,650 + SGL_RS14510 0.23 -0.3
2,710,652 + SGL_RS14510 0.24 -2.0
2,710,660 - SGL_RS14510 0.25 +0.7
2,710,722 - SGL_RS14510 0.35 +2.0
2,711,162 + -0.9

Or see this region's nucleotide sequence