Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14435 and SGL_RS14440 are separated by 0 nucleotides SGL_RS14440 and SGL_RS14445 are separated by 5 nucleotides SGL_RS14445 and SGL_RS19635 are separated by 474 nucleotides SGL_RS19635 and SGL_RS14450 are separated by 349 nucleotides
SGL_RS14435: SGL_RS14435 - cobalt transporter CbiM, at 2,693,080 to 2,693,724
_RS14435
SGL_RS14440: SGL_RS14440 - carboxypeptidase-like regulatory domain-containing protein, at 2,693,725 to 2,694,255
_RS14440
SGL_RS14445: SGL_RS14445 - hypothetical protein, at 2,694,261 to 2,695,145
_RS14445
SGL_RS19635: SGL_RS19635 - hypothetical protein, at 2,695,620 to 2,695,775
_RS19635
SGL_RS14450: SGL_RS14450 - hypothetical protein, at 2,696,125 to 2,696,403
_RS14450
Position (kb)
2694
2695
2696 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2693.437 kb on + strand, within SGL_RS14435 at 2693.506 kb on - strand, within SGL_RS14435 at 2693.737 kb on - strand at 2693.737 kb on - strand at 2693.920 kb on - strand, within SGL_RS14440 at 2693.953 kb on - strand, within SGL_RS14440 at 2694.412 kb on - strand, within SGL_RS14445 at 2694.423 kb on + strand, within SGL_RS14445 at 2694.628 kb on + strand, within SGL_RS14445 at 2694.678 kb on + strand, within SGL_RS14445 at 2694.678 kb on + strand, within SGL_RS14445 at 2694.686 kb on - strand, within SGL_RS14445 at 2694.892 kb on + strand, within SGL_RS14445 at 2695.003 kb on - strand, within SGL_RS14445 at 2695.183 kb on - strand at 2695.315 kb on - strand at 2695.397 kb on - strand at 2695.429 kb on - strand at 2695.704 kb on - strand, within SGL_RS19635 at 2696.049 kb on + strand at 2696.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,693,437 + SGL_RS14435 0.55 -4.3 2,693,506 - SGL_RS14435 0.66 -4.1 2,693,737 - -6.3 2,693,737 - -2.5 2,693,920 - SGL_RS14440 0.37 -3.2 2,693,953 - SGL_RS14440 0.43 -2.7 2,694,412 - SGL_RS14445 0.17 -5.2 2,694,423 + SGL_RS14445 0.18 -1.5 2,694,628 + SGL_RS14445 0.41 -2.8 2,694,678 + SGL_RS14445 0.47 -1.8 2,694,678 + SGL_RS14445 0.47 -2.6 2,694,686 - SGL_RS14445 0.48 +0.8 2,694,892 + SGL_RS14445 0.71 -3.7 2,695,003 - SGL_RS14445 0.84 -2.5 2,695,183 - -4.6 2,695,315 - -0.3 2,695,397 - +2.1 2,695,429 - +0.2 2,695,704 - SGL_RS19635 0.54 +0.0 2,696,049 + -0.0 2,696,091 - +0.3
Or see this region's nucleotide sequence