Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14445

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14435 and SGL_RS14440 are separated by 0 nucleotidesSGL_RS14440 and SGL_RS14445 are separated by 5 nucleotidesSGL_RS14445 and SGL_RS19635 are separated by 474 nucleotidesSGL_RS19635 and SGL_RS14450 are separated by 349 nucleotides SGL_RS14435: SGL_RS14435 - cobalt transporter CbiM, at 2,693,080 to 2,693,724 _RS14435 SGL_RS14440: SGL_RS14440 - carboxypeptidase-like regulatory domain-containing protein, at 2,693,725 to 2,694,255 _RS14440 SGL_RS14445: SGL_RS14445 - hypothetical protein, at 2,694,261 to 2,695,145 _RS14445 SGL_RS19635: SGL_RS19635 - hypothetical protein, at 2,695,620 to 2,695,775 _RS19635 SGL_RS14450: SGL_RS14450 - hypothetical protein, at 2,696,125 to 2,696,403 _RS14450 Position (kb) 2694 2695 2696Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2693.437 kb on + strand, within SGL_RS14435at 2693.506 kb on - strand, within SGL_RS14435at 2693.737 kb on - strandat 2693.737 kb on - strandat 2693.920 kb on - strand, within SGL_RS14440at 2693.953 kb on - strand, within SGL_RS14440at 2694.412 kb on - strand, within SGL_RS14445at 2694.423 kb on + strand, within SGL_RS14445at 2694.628 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.678 kb on + strand, within SGL_RS14445at 2694.686 kb on - strand, within SGL_RS14445at 2694.892 kb on + strand, within SGL_RS14445at 2695.003 kb on - strand, within SGL_RS14445at 2695.183 kb on - strandat 2695.315 kb on - strandat 2695.397 kb on - strandat 2695.429 kb on - strandat 2695.704 kb on - strand, within SGL_RS19635at 2696.049 kb on + strandat 2696.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,693,437 + SGL_RS14435 0.55 -4.3
2,693,506 - SGL_RS14435 0.66 -4.1
2,693,737 - -6.3
2,693,737 - -2.5
2,693,920 - SGL_RS14440 0.37 -3.2
2,693,953 - SGL_RS14440 0.43 -2.7
2,694,412 - SGL_RS14445 0.17 -5.2
2,694,423 + SGL_RS14445 0.18 -1.5
2,694,628 + SGL_RS14445 0.41 -2.8
2,694,678 + SGL_RS14445 0.47 -1.8
2,694,678 + SGL_RS14445 0.47 -2.6
2,694,686 - SGL_RS14445 0.48 +0.8
2,694,892 + SGL_RS14445 0.71 -3.7
2,695,003 - SGL_RS14445 0.84 -2.5
2,695,183 - -4.6
2,695,315 - -0.3
2,695,397 - +2.1
2,695,429 - +0.2
2,695,704 - SGL_RS19635 0.54 +0.0
2,696,049 + -0.0
2,696,091 - +0.3

Or see this region's nucleotide sequence