Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14270

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14265 and SGL_RS14270 are separated by 101 nucleotidesSGL_RS14270 and SGL_RS14275 are separated by 70 nucleotidesSGL_RS14275 and SGL_RS14280 are separated by 255 nucleotides SGL_RS14265: SGL_RS14265 - DUF3782 domain-containing protein, at 2,655,459 to 2,656,037 _RS14265 SGL_RS14270: SGL_RS14270 - folate-binding protein YgfZ, at 2,656,139 to 2,657,077 _RS14270 SGL_RS14275: SGL_RS14275 - hypothetical protein, at 2,657,148 to 2,657,594 _RS14275 SGL_RS14280: SGL_RS14280 - adenosylcobinamide-GDP ribazoletransferase, at 2,657,850 to 2,658,632 _RS14280 Position (kb) 2656 2657 2658Strain fitness (log2 ratio) -2 -1 0 1at 2655.401 kb on + strandat 2655.761 kb on + strand, within SGL_RS14265at 2655.761 kb on + strand, within SGL_RS14265at 2655.811 kb on - strand, within SGL_RS14265at 2655.877 kb on - strand, within SGL_RS14265at 2656.015 kb on + strandat 2656.061 kb on + strandat 2656.239 kb on + strand, within SGL_RS14270at 2656.338 kb on + strand, within SGL_RS14270at 2656.672 kb on - strand, within SGL_RS14270at 2656.825 kb on + strand, within SGL_RS14270at 2656.833 kb on - strand, within SGL_RS14270at 2656.847 kb on + strand, within SGL_RS14270at 2656.863 kb on + strand, within SGL_RS14270at 2656.905 kb on + strand, within SGL_RS14270at 2656.913 kb on - strand, within SGL_RS14270at 2656.922 kb on - strand, within SGL_RS14270at 2656.938 kb on + strand, within SGL_RS14270at 2656.990 kb on + strandat 2656.998 kb on - strandat 2657.000 kb on - strandat 2657.137 kb on + strandat 2657.193 kb on + strand, within SGL_RS14275at 2657.196 kb on - strand, within SGL_RS14275at 2657.224 kb on + strand, within SGL_RS14275at 2657.246 kb on + strand, within SGL_RS14275at 2657.307 kb on + strand, within SGL_RS14275at 2657.396 kb on + strand, within SGL_RS14275at 2657.411 kb on - strand, within SGL_RS14275at 2657.413 kb on + strand, within SGL_RS14275at 2657.457 kb on - strand, within SGL_RS14275at 2657.489 kb on + strand, within SGL_RS14275at 2657.605 kb on - strandat 2657.893 kb on + strandat 2658.020 kb on + strand, within SGL_RS14280

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,655,401 + -0.8
2,655,761 + SGL_RS14265 0.52 -0.2
2,655,761 + SGL_RS14265 0.52 -0.3
2,655,811 - SGL_RS14265 0.61 -0.2
2,655,877 - SGL_RS14265 0.72 +0.1
2,656,015 + +0.2
2,656,061 + +0.3
2,656,239 + SGL_RS14270 0.11 +1.2
2,656,338 + SGL_RS14270 0.21 +1.2
2,656,672 - SGL_RS14270 0.57 +1.2
2,656,825 + SGL_RS14270 0.73 +0.9
2,656,833 - SGL_RS14270 0.74 +1.6
2,656,847 + SGL_RS14270 0.75 +1.0
2,656,863 + SGL_RS14270 0.77 +1.0
2,656,905 + SGL_RS14270 0.82 +1.5
2,656,913 - SGL_RS14270 0.82 +0.8
2,656,922 - SGL_RS14270 0.83 +0.3
2,656,938 + SGL_RS14270 0.85 +0.4
2,656,990 + +0.7
2,656,998 - +0.1
2,657,000 - +1.6
2,657,137 + +0.3
2,657,193 + SGL_RS14275 0.10 -0.9
2,657,196 - SGL_RS14275 0.11 -1.5
2,657,224 + SGL_RS14275 0.17 -1.8
2,657,246 + SGL_RS14275 0.22 -1.6
2,657,307 + SGL_RS14275 0.36 -0.8
2,657,396 + SGL_RS14275 0.55 -0.9
2,657,411 - SGL_RS14275 0.59 -2.5
2,657,413 + SGL_RS14275 0.59 -1.6
2,657,457 - SGL_RS14275 0.69 -2.4
2,657,489 + SGL_RS14275 0.76 -0.9
2,657,605 - -2.3
2,657,893 + +0.9
2,658,020 + SGL_RS14280 0.22 -0.5

Or see this region's nucleotide sequence