Experiment: low light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13690 and SGL_RS13695 are separated by 279 nucleotides SGL_RS13695 and SGL_RS20080 are separated by 37 nucleotides SGL_RS20080 and SGL_RS20085 are separated by 5 nucleotides SGL_RS20085 and SGL_RS13705 overlap by 4 nucleotides
SGL_RS13690: SGL_RS13690 - pentapeptide repeat-containing protein, at 2,541,864 to 2,542,724
_RS13690
SGL_RS13695: SGL_RS13695 - SIMPL domain-containing protein, at 2,543,004 to 2,543,687
_RS13695
SGL_RS20080: SGL_RS20080 - DUF4335 domain-containing protein, at 2,543,725 to 2,544,018
_RS20080
SGL_RS20085: SGL_RS20085 - DUF4335 domain-containing protein, at 2,544,024 to 2,544,377
_RS20085
SGL_RS13705: SGL_RS13705 - DUF3038 domain-containing protein, at 2,544,374 to 2,544,982
_RS13705
Position (kb)
2543
2544 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2542.166 kb on - strand, within SGL_RS13690 at 2542.642 kb on - strand at 2542.701 kb on - strand at 2542.704 kb on + strand at 2542.741 kb on + strand at 2542.785 kb on + strand at 2542.791 kb on - strand at 2542.793 kb on - strand at 2542.793 kb on - strand at 2542.966 kb on + strand at 2543.041 kb on + strand at 2543.048 kb on + strand at 2543.056 kb on - strand at 2543.116 kb on + strand, within SGL_RS13695 at 2543.116 kb on + strand, within SGL_RS13695 at 2543.219 kb on - strand, within SGL_RS13695 at 2543.253 kb on + strand, within SGL_RS13695 at 2543.381 kb on + strand, within SGL_RS13695 at 2543.384 kb on - strand, within SGL_RS13695 at 2543.393 kb on - strand, within SGL_RS13695 at 2543.562 kb on + strand, within SGL_RS13695 at 2543.597 kb on - strand, within SGL_RS13695 at 2543.598 kb on + strand, within SGL_RS13695 at 2543.652 kb on + strand at 2543.722 kb on + strand at 2543.794 kb on - strand, within SGL_RS20080
Per-strain Table
Position Strand Gene LocusTag Fraction low light; bubbling remove 2,542,166 - SGL_RS13690 0.35 -0.6 2,542,642 - +0.3 2,542,701 - +0.4 2,542,704 + -0.5 2,542,741 + +0.1 2,542,785 + +0.3 2,542,791 - +0.5 2,542,793 - -1.1 2,542,793 - +0.3 2,542,966 + -2.0 2,543,041 + -6.6 2,543,048 + -2.8 2,543,056 - -3.9 2,543,116 + SGL_RS13695 0.16 -5.0 2,543,116 + SGL_RS13695 0.16 -3.4 2,543,219 - SGL_RS13695 0.31 -3.4 2,543,253 + SGL_RS13695 0.36 -5.0 2,543,381 + SGL_RS13695 0.55 -5.4 2,543,384 - SGL_RS13695 0.56 -4.4 2,543,393 - SGL_RS13695 0.57 -6.1 2,543,562 + SGL_RS13695 0.82 -6.6 2,543,597 - SGL_RS13695 0.87 -5.9 2,543,598 + SGL_RS13695 0.87 -5.3 2,543,652 + -4.1 2,543,722 + -0.2 2,543,794 - SGL_RS20080 0.23 -3.6
Or see this region's nucleotide sequence