Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13370

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13360 and SGL_RS13365 are separated by 222 nucleotidesSGL_RS13365 and SGL_RS13370 are separated by 66 nucleotidesSGL_RS13370 and SGL_RS13375 are separated by 80 nucleotides SGL_RS13360: SGL_RS13360 - DUF1190 domain-containing protein, at 2,463,555 to 2,464,304 _RS13360 SGL_RS13365: SGL_RS13365 - flavin reductase family protein, at 2,464,527 to 2,465,009 _RS13365 SGL_RS13370: SGL_RS13370 - exonuclease SbcCD subunit D, at 2,465,076 to 2,466,326 _RS13370 SGL_RS13375: SGL_RS13375 - ATP-dependent Clp protease ATP-binding subunit, at 2,466,407 to 2,468,872 _RS13375 Position (kb) 2465 2466 2467Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2464.077 kb on - strand, within SGL_RS13360at 2464.107 kb on + strand, within SGL_RS13360at 2464.576 kb on + strand, within SGL_RS13365at 2464.675 kb on - strand, within SGL_RS13365at 2465.032 kb on + strandat 2465.040 kb on - strandat 2465.098 kb on - strandat 2465.262 kb on + strand, within SGL_RS13370at 2465.877 kb on + strand, within SGL_RS13370at 2466.057 kb on + strand, within SGL_RS13370at 2466.157 kb on + strand, within SGL_RS13370at 2466.202 kb on + strandat 2466.209 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,464,077 - SGL_RS13360 0.70 -0.5
2,464,107 + SGL_RS13360 0.74 -0.2
2,464,576 + SGL_RS13365 0.10 +0.5
2,464,675 - SGL_RS13365 0.31 -0.3
2,465,032 + -0.5
2,465,040 - +0.8
2,465,098 - -0.1
2,465,262 + SGL_RS13370 0.15 -3.9
2,465,877 + SGL_RS13370 0.64 -2.2
2,466,057 + SGL_RS13370 0.78 -4.2
2,466,157 + SGL_RS13370 0.86 -4.8
2,466,202 + -5.0
2,466,209 + -3.6

Or see this region's nucleotide sequence