Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13055

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13050 and SGL_RS13055 are separated by 60 nucleotidesSGL_RS13055 and SGL_RS13060 are separated by 132 nucleotides SGL_RS13050: SGL_RS13050 - protein translocase subunit SecD, at 2,400,914 to 2,402,332 _RS13050 SGL_RS13055: SGL_RS13055 - protein translocase subunit SecF, at 2,402,393 to 2,403,340 _RS13055 SGL_RS13060: SGL_RS13060 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,403,473 to 2,404,507 _RS13060 Position (kb) 2402 2403 2404Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2401.418 kb on - strand, within SGL_RS13050at 2401.420 kb on + strand, within SGL_RS13050at 2402.314 kb on + strandat 2402.611 kb on - strand, within SGL_RS13055at 2402.611 kb on - strand, within SGL_RS13055at 2402.798 kb on + strand, within SGL_RS13055at 2402.908 kb on + strand, within SGL_RS13055at 2402.916 kb on - strand, within SGL_RS13055at 2403.119 kb on + strand, within SGL_RS13055at 2403.205 kb on - strand, within SGL_RS13055at 2403.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,401,418 - SGL_RS13050 0.36 -1.7
2,401,420 + SGL_RS13050 0.36 -1.7
2,402,314 + +2.4
2,402,611 - SGL_RS13055 0.23 -2.4
2,402,611 - SGL_RS13055 0.23 -0.1
2,402,798 + SGL_RS13055 0.43 -1.4
2,402,908 + SGL_RS13055 0.54 -2.6
2,402,916 - SGL_RS13055 0.55 -2.4
2,403,119 + SGL_RS13055 0.77 -2.1
2,403,205 - SGL_RS13055 0.86 -2.9
2,403,271 + -1.9

Or see this region's nucleotide sequence