Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12495

Experiment: low light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12490 and SGL_RS12495 are separated by 158 nucleotidesSGL_RS12495 and SGL_RS20035 are separated by 799 nucleotides SGL_RS12490: SGL_RS12490 - glutamate--cysteine ligase, at 2,258,074 to 2,259,243 _RS12490 SGL_RS12495: SGL_RS12495 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 2,259,402 to 2,259,863 _RS12495 SGL_RS20035: SGL_RS20035 - LysM peptidoglycan-binding domain-containing protein, at 2,260,663 to 2,261,631 _RS20035 Position (kb) 2259 2260Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2258.439 kb on + strand, within SGL_RS12490at 2258.550 kb on + strand, within SGL_RS12490at 2258.856 kb on + strand, within SGL_RS12490at 2258.937 kb on - strand, within SGL_RS12490at 2258.937 kb on - strand, within SGL_RS12490at 2258.942 kb on - strand, within SGL_RS12490at 2259.197 kb on + strandat 2259.205 kb on - strandat 2259.205 kb on - strandat 2259.210 kb on - strandat 2259.253 kb on - strandat 2259.299 kb on - strandat 2259.637 kb on + strand, within SGL_RS12495at 2259.655 kb on - strand, within SGL_RS12495at 2259.709 kb on + strand, within SGL_RS12495at 2259.773 kb on + strand, within SGL_RS12495at 2259.783 kb on + strand, within SGL_RS12495at 2259.835 kb on - strandat 2259.853 kb on + strandat 2259.853 kb on + strandat 2259.861 kb on - strandat 2259.891 kb on - strandat 2260.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction low light; bubbling
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2,258,439 + SGL_RS12490 0.31 -4.9
2,258,550 + SGL_RS12490 0.41 -2.9
2,258,856 + SGL_RS12490 0.67 -3.8
2,258,937 - SGL_RS12490 0.74 -3.6
2,258,937 - SGL_RS12490 0.74 -4.0
2,258,942 - SGL_RS12490 0.74 -2.3
2,259,197 + -0.7
2,259,205 - -1.5
2,259,205 - -1.8
2,259,210 - -1.2
2,259,253 - -0.9
2,259,299 - -0.6
2,259,637 + SGL_RS12495 0.51 -1.9
2,259,655 - SGL_RS12495 0.55 -1.0
2,259,709 + SGL_RS12495 0.66 -2.0
2,259,773 + SGL_RS12495 0.80 -1.3
2,259,783 + SGL_RS12495 0.82 -1.0
2,259,835 - -0.8
2,259,853 + -1.1
2,259,853 + -0.2
2,259,861 - -0.9
2,259,891 - -0.5
2,260,104 - +0.2

Or see this region's nucleotide sequence